Browse Element(s) Details


OsAffx.27678.1.S1_at

Description tigr:9634.m01693
TID=OsAffx.27678.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1682011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16790OsAffx.27677.1.S1_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16790OsAffx.27677.1.S1_s_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16800OsAffx.28610.4.S1_s_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.4.S1_x_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.2.S1_x_at5/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.3.S1_at2/116+9728463..9729124hypothetical protein
LOC_Os06g16810OsAffx.4854.1.S1_at11/116+9733901..9734545Polygalacturonase precursor, putative
LOC_Os06g16820OsAffx.27678.1.S1_at11/116+9742064..9742879hypothetical protein
LOC_Os06g16830NANA6+9743691..9744196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16840OsAffx.30536.1.S1_x_at1/116+9749163..9752141transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16850Os.45977.1.S1_at1/116+9755316..9758917retrotransposon protein, putative, unclassified
LOC_Os06g16860OsAffx.32056.1.S1_x_at11/116+9761557..9764127transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16860OsAffx.32056.1.S1_at11/116+9761557..9764127transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16870OsAffx.10637.1.S1_s_at11/116+9765795..9769481transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16870OsAffx.10637.3.S1_s_at11/116+9765795..9769481transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16870OsAffx.10637.4.S1_s_at8/116+9765795..9769481transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27678.1.S1_at--1075--9491Chr06:9742103..9742334 (25 bp)
TCTCGCCCGGTGAACACAATATTGC
LOC_Os06g16820
OsAffx.27678.1.S1_at--410--5711Chr06:9742370..9742394 (25 bp)
GACCCACGGGTCAAACAACTAGATC
LOC_Os06g16820
OsAffx.27678.1.S1_at--341--2451Chr06:9742383..9742407 (25 bp)
AACAACTAGATCACCCGTGGACCGG
LOC_Os06g16820
OsAffx.27678.1.S1_at--736--5811Chr06:9742402..9742426 (25 bp)
GACCGGGTACACAGAGACTATCCAC
LOC_Os06g16820
OsAffx.27678.1.S1_at--590--6111Chr06:9742437..9742461 (25 bp)
GAGTGAGATCCTACGTGTCAACCGA
LOC_Os06g16820
OsAffx.27678.1.S1_at--1068--7051Chr06:9742453..9742477 (25 bp)
GTCAACCGAAACAAGTGGCCGTCAA
LOC_Os06g16820
OsAffx.27678.1.S1_at--499--4591Chr06:9742500..9742524 (25 bp)
GCGAACTGCACACGTGGGCAACCAC
LOC_Os06g16820
OsAffx.27678.1.S1_at--918--7631Chr06:9742564..9742588 (25 bp)
GGGAGAGGCTCTTACCATGGGTACA
LOC_Os06g16820
OsAffx.27678.1.S1_at--693--3491Chr06:9742579..9742603 (25 bp)
CATGGGTACAACACAGCGAGGGAAC
LOC_Os06g16820
OsAffx.27678.1.S1_at--452--4071Chr06:9742663..9742687 (25 bp)
CGAGGGAATGGCTCTGGCGATCTTC
LOC_Os06g16820
OsAffx.27678.1.S1_at--5--3791Chr06:9742674..9742698 (25 bp)
CTCTGGCGATCTTCAGGTTTGGTGA
LOC_Os06g16820
Target Sequence 
TCTCGCCCGGTGAACACAATATTGCTCAAGAAAAGAAAGGATCAAGCAACTTCCAGCCGAGACCCACGGGTCAAACAACT
AGATCACCCGTGGACCGGGTACACAGAGACTATCCACAGAGAGAACGGAGTGAGATCCTACGTGTCAACCGAAACAAGTG
GCCGTCAAACGGACCTCACGCGACTACCACGCGAACTGCACACGTGGGCAACCACGCGGCAACCACACGGGGAGGACGAG
GAGAGGGCAGCGAAGGGAGAGGCTCTTACCATGGGTACAACACAGCGAGGGAACAATGGTGGCGACCGGCAACGACGAAC
GGAAGAGGACGACATAGACGAACGGACCAACGACGAGGGAATGGCTCTGGCGATCTTCAGGTTTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis