Browse Element(s) Details


OsAffx.27693.1.S1_at

Description tigr:9634.m01816
TID=OsAffx.27693.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 137718 embryogenesis transmembrane protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1885011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18820OsAffx.15484.1.S1_at11/116+10684597..10689032expressed protein
LOC_Os06g18820Os.52704.1.S1_at10/116+10684597..10689032expressed protein
LOC_Os06g18830Os.53823.1.S1_at11/116+10689712..10693168Protein kinase G11A, putative, expressed
LOC_Os06g18840NANA6+10703924..10706572retrotransposon protein, putative, LINE subclass
LOC_Os06g18850OsAffx.27693.1.S1_at11/116+10708310..10713424hypothetical protein
LOC_Os06g18860NANA6+10714502..10717209hAT family dimerisation domain containing protein
LOC_Os06g18870NANA6+10723595..10723849hypothetical protein
LOC_Os06g18880OsAffx.27695.1.S1_at11/116+10725715..10728489hypothetical protein
LOC_Os06g18890NANA6+10730135..10730489hypothetical protein
LOC_Os06g18900Os.40342.1.A1_s_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900OsAffx.15485.1.S1_at11/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed
LOC_Os06g18900Os.18183.1.S1_at1/116+10737693..10741349embryogenesis transmembrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27693.1.S1_at--187--2871Chr06:10710539..10710563 (25 bp)
AAGTGACAAGTCAGATCCCCTTATC
LOC_Os06g18850
OsAffx.27693.1.S1_at--506--3631Chr06:10710475..10710499 (25 bp)
CTTGCAATTCTTGCTGCATCCATTG
LOC_Os06g18850
OsAffx.27693.1.S1_at--695--3431Chr06:10710411..10710435 (25 bp)
CAGAGGACAGTCGTGATGGCTACAA
LOC_Os06g18850
OsAffx.27693.1.S1_at--920--931Chr06:10710366..10710390 (25 bp)
AGGACATACACTCCAGACGCTATAT
LOC_Os06g18850
OsAffx.27693.1.S1_at--297--3551Chr06:10710320..10710344 (25 bp)
CATCTCTTTCATGGCATCTATTGCT
LOC_Os06g18850
OsAffx.27693.1.S1_at--718--351Chr06:10710258..10710282 (25 bp)
ATAAGGTTCCACTCCAAGCATTGTT
LOC_Os06g18850
OsAffx.27693.1.S1_at--722--2031Chr06:10710221..10710245 (25 bp)
ACTAGACCTGTTGGCTCTGATGACA
LOC_Os06g18850
OsAffx.27693.1.S1_at--364--6971Chr06:10708644..10708668 (25 bp)
GTAGCTGTGTTGACTTTCTGCACTT
LOC_Os06g18850
OsAffx.27693.1.S1_at--538--5091Chr06:10708555..10708649 (25 bp)
GCACTTCTCCAGAACCTTATCAAGT
LOC_Os06g18850
OsAffx.27693.1.S1_at--82--2831Chr06:10708534..10708558 (25 bp)
AAGTTCTGCAATCCCAAACGCAAGA
LOC_Os06g18850
OsAffx.27693.1.S1_at--170--5111Chr06:10708354..10708485 (25 bp)
GCACATAACTCGCATCAGGACATAG
LOC_Os06g18850
Target Sequence 
AAGTGACAAGTCAGATCCCCTTATCAATGAAAAGAAAGAAAAGAGGCATAAGTACTTGATGCTGCTTGCAATTCTTGCTG
CATCCATTGCTTACCAAGCTGGTCTGAACCCACCCGGGGGTTTCTGGTCAGAGGACAGTCGTGATGGCTACAAGGCTGGC
AACCCGCTCCTTAAGGACATACACTCCAGACGCTATATGGTGTTCTATGTTTCTAATTCCATCTCTTTCATGGCATCTAT
TGCTGTAATCATGCTTCTGCTGAGTAAATCTGTGAGAAAGAATAAGGTTCCACTCCAAGCATTGTTCTTGATCATGATAC
TAGACCTGTTGGCTCTGATGACAGCTTATGCAGCTGGAAGCTGCAGAAAGATAAGGAAAGTGAAGGAAAACGATTGTAGC
TGTGTTGACTTTCTGCACTTCTCCAGAACCTTATCAAGTTCTGCAATCCCAAACGCAAGAGGATCTCTGAGGGTAGCAAA
AAGAAAAGGAACATGGGATGGTATAGATGCACATAACTCGCATCAGGACATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis