Browse Element(s) Details


OsAffx.15484.1.S1_at

Description tigr:9634.m01813
TID=OsAffx.15484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1882011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18790NANA6+10658719..10659690Flavonol 3-O-glucosyltransferase 5, putative
LOC_Os06g18800Os.45173.5.S1_x_at4/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18800Os.45173.1.S1_x_at3/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18800OsAffx.20877.1.S1_at1/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18810OsAffx.23523.5.S1_at11/116+10679072..10682213hypothetical protein
LOC_Os06g18810OsAffx.4928.1.S1_at1/116+10679072..10682213hypothetical protein
LOC_Os06g18810Os.51646.1.S1_at1/116+10679072..10682213hypothetical protein
LOC_Os06g18820OsAffx.15484.1.S1_at11/116+10684597..10689032expressed protein
LOC_Os06g18820Os.52704.1.S1_at10/116+10684597..10689032expressed protein
LOC_Os06g18830Os.53823.1.S1_at11/116+10689712..10693168Protein kinase G11A, putative, expressed
LOC_Os06g18840NANA6+10703924..10706572retrotransposon protein, putative, LINE subclass
LOC_Os06g18850OsAffx.27693.1.S1_at11/116+10708310..10713424hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15484.1.S1_at--294--5851Chr06:10687127..10687231 (25 bp)
GACCAGTACAACAGGCCATTCTTTG
LOC_Os06g18820
OsAffx.15484.1.S1_at--383--8811Chr06:10688373..10688397 (25 bp)
TGTTGATGTGTACCTCATCGAGAGC
LOC_Os06g18820
OsAffx.15484.1.S1_at--140--6011Chr06:10688392..10688416 (25 bp)
GAGAGCGATCATGTTACCAATGCGA
LOC_Os06g18820
OsAffx.15484.1.S1_at--849--2991Chr06:10688410..10688434 (25 bp)
AATGCGATCCTCGAACTTATTCCGG
LOC_Os06g18820
OsAffx.15484.1.S1_at--279--91Chr06:10688428..10688452 (25 bp)
ATTCCGGTCTTTCATGTACAACAGC
LOC_Os06g18820
OsAffx.15484.1.S1_at--315--1431Chr06:10688624..10688648 (25 bp)
AGAACGCACCTCTATACTGTGAAGT
LOC_Os06g18820
OsAffx.15484.1.S1_at--573--6151Chr06:10688671..10688695 (25 bp)
GAGGTTACAACTGTGCCAACTGCTG
LOC_Os06g18820
OsAffx.15484.1.S1_at--839--8851Chr06:10688691..10688715 (25 bp)
TGCTGATCCAACACCACCAATTTCA
LOC_Os06g18820
OsAffx.15484.1.S1_at--541--4351Chr06:10688707..10688731 (25 bp)
CCAATTTCACCTTCTCCTGTAAATA
LOC_Os06g18820
OsAffx.15484.1.S1_at--456--1331Chr06:10688735..10688759 (25 bp)
AGAGTAATTCTATCAGCCCAACGCC
LOC_Os06g18820
OsAffx.15484.1.S1_at--961--9811Chr06:10688781..10688805 (25 bp)
TAACAATCGCGCTGTGGCTGATGAT
LOC_Os06g18820
Target Sequence 
GACCAGTACAACAGGCCATTCTTTGGCATGGCCAGATAGGGGAGCTGAGAAGGACGACTGCCTAGAGCTTAGGAAAACCC
AGGGCTTTCTGGTTAATGTTGATGTGTACCTCATCGAGAGCGATCATGTTACCAATGCGATCCTCGAACTTATTCCGGTC
TTTCATGTACAACAGCTAGTTCTGGGGGTTTCAAAATCCAAATTGCGGAAGTTCAAGAGAGGAAACACAATAGCAGGACA
GGTTCAGAAGAACGCACCTCTATACTGTGAAGTCAAGATTGTCTGTGATGGCAAGGAGGTTACAACTGTGCCAACTGCTG
ATCCAACACCACCAATTTCACCTTCTCCTGTAAATAACAAGAGTAATTCTATCAGCCCAACGCCACTATCACCTGCACCA
GATCATAACAATCGCGCTGTGGCTGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15484.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis