Browse Element(s) Details


OsAffx.23523.5.S1_at

Description tigr:9634.m01812
TID=OsAffx.23523.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1881011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18780Os.47463.1.S1_x_at5/116+10648541..10658109transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g18780Os.14491.2.S1_x_at4/116+10648541..10658109transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g18780Os.27037.1.A1_at1/116+10648541..10658109transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g18780Os.50730.1.S1_x_at1/116+10648541..10658109transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g18790NANA6+10658719..10659690Flavonol 3-O-glucosyltransferase 5, putative
LOC_Os06g18800Os.45173.5.S1_x_at4/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18800Os.45173.1.S1_x_at3/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18800OsAffx.20877.1.S1_at1/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18810OsAffx.23523.5.S1_at11/116+10679072..10682213hypothetical protein
LOC_Os06g18810OsAffx.4928.1.S1_at1/116+10679072..10682213hypothetical protein
LOC_Os06g18810Os.51646.1.S1_at1/116+10679072..10682213hypothetical protein
LOC_Os06g18820OsAffx.15484.1.S1_at11/116+10684597..10689032expressed protein
LOC_Os06g18820Os.52704.1.S1_at10/116+10684597..10689032expressed protein
LOC_Os06g18830Os.53823.1.S1_at11/116+10689712..10693168Protein kinase G11A, putative, expressed
LOC_Os06g18840NANA6+10703924..10706572retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23523.5.S1_at--364--6251Chr06:10680086..10680110 (25 bp)
GATGGATCTTTGAGGTCATTGCTAT
LOC_Os06g18810
OsAffx.23523.5.S1_at--971--4851Chr06:10680066..10680090 (25 bp)
GCTATCCAAGCTACAAGTTCACTCT
LOC_Os06g18810
OsAffx.23523.5.S1_at--528--1211Chr06:10680051..10680075 (25 bp)
AGTTCACTCTATTCCAAATGCCCTT
LOC_Os06g18810
OsAffx.23523.5.S1_at--67--1171Chr06:10680001..10680025 (25 bp)
AGTCATTAAGCTTGTCCCAGTGTTC
LOC_Os06g18810
OsAffx.23523.5.S1_at--74--3571Chr06:10679973..10679997 (25 bp)
CATAATGGTTCGGTTTGATCTGACA
LOC_Os06g18810
OsAffx.23523.5.S1_at--1114--5471Chr06:10679946..10679970 (25 bp)
GAACTTGGAGGTGCATTTGGACTCT
LOC_Os06g18810
OsAffx.23523.5.S1_at--379--5071Chr06:10679891..10679915 (25 bp)
GCAGCTCTACTGTACCATAGAAGAG
LOC_Os06g18810
OsAffx.23523.5.S1_at--96--5251Chr06:10679825..10679849 (25 bp)
GAATCAATTTCCATGCTCCAGGTGA
LOC_Os06g18810
OsAffx.23523.5.S1_at--671--6531Chr06:10679726..10679750 (25 bp)
GATTTCAGTGGCAACCATTGGGCAA
LOC_Os06g18810
OsAffx.23523.5.S1_at--71--31Chr06:10679710..10679734 (25 bp)
ATTGGGCAAGCTTTCAGACTAAGAT
LOC_Os06g18810
OsAffx.23523.5.S1_at--901--4391Chr06:10679131..10679155 (25 bp)
GCCAAGCTCTGCAACCGTGACAATA
LOC_Os06g18810
Target Sequence 
GATGGATCTTTGAGGTCATTGCTATCCAAGCTACAAGTTCACTCTATTCCAAATGCCCTTTCCTTCACTAAGCAAGAGCA
TATCAAGTCATTAAGCTTGTCCCAGTGTTCAGACATAATGGTTCGGTTTGATCTGACATGGAACTTGGAGGTGCATTTGG
ACTCTGGCGGGGTTCTGCTTCAGTTCCTTAATGCTGCAGCTCTACTGTACCATAGAAGAGTTGCACAAGGATATAGGCGC
ACACTCAAGCTCTCTATATGTGAATCAATTTCCATGCTCCAGGTGATTAAATCAATAGCTGCCAACTTAATTTGGGATGT
GGAGGCTAGAAATCGTTTGGTAGTCAAGAAACAAGATGAAGATTTCAGTGGCAACCATTGGGCAAGCTTTCAGACTAAGA
TGCAAAGGGTGCTAACATCAAGGCTTGCCAAGCTCTGCAACCGTGACAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23523.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis