Browse Element(s) Details


Os.53823.1.S1_at

Description gb:AK100261.1
DB_XREF= gi:32985470
TID=Os.53823.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53823 (NCBI UniGene Cluster)
UG_TITLE=Rice (O.sativa) G11A protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063D14, full insert sequence.
FL= gb:AK100261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1883011/11Protein kinase G11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18800Os.45173.5.S1_x_at4/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18800Os.45173.1.S1_x_at3/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18800OsAffx.20877.1.S1_at1/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18810OsAffx.23523.5.S1_at11/116+10679072..10682213hypothetical protein
LOC_Os06g18810OsAffx.4928.1.S1_at1/116+10679072..10682213hypothetical protein
LOC_Os06g18810Os.51646.1.S1_at1/116+10679072..10682213hypothetical protein
LOC_Os06g18820OsAffx.15484.1.S1_at11/116+10684597..10689032expressed protein
LOC_Os06g18820Os.52704.1.S1_at10/116+10684597..10689032expressed protein
LOC_Os06g18830Os.53823.1.S1_at11/116+10689712..10693168Protein kinase G11A, putative, expressed
LOC_Os06g18840NANA6+10703924..10706572retrotransposon protein, putative, LINE subclass
LOC_Os06g18850OsAffx.27693.1.S1_at11/116+10708310..10713424hypothetical protein
LOC_Os06g18860NANA6+10714502..10717209hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53823.1.S1_at--795--5551Chr06:10690249..10690273 (25 bp)
GAAACCGTGCAACACTGTTCAACGT
LOC_Os06g18830
Os.53823.1.S1_at--53--9011Chr06:10690200..10690224 (25 bp)
TGAATACCCGGTTGTGAGCTTCTCG
LOC_Os06g18830
Os.53823.1.S1_at--923--11Chr06:10690128..10690152 (25 bp)
ATTGGGTTGTAAGCGTGGTGCCACT
LOC_Os06g18830
Os.53823.1.S1_at--380--2571Chr06:10690070..10690094 (25 bp)
AACTGGGCATTGATACGCTGCGCAA
LOC_Os06g18830
Os.53823.1.S1_at--751--1011Chr06:10690036..10690060 (25 bp)
AGGTTCCCAGGCCTGTTGAGATTGA
LOC_Os06g18830
Os.53823.1.S1_at--231--871Chr06:10690010..10690034 (25 bp)
AGGCCTCCAAAGCAACCTGTTTCAA
LOC_Os06g18830
Os.53823.1.S1_at--710--6811Chr06:10689992..10690016 (25 bp)
GTTTCAACATCGGAGCCTGCTGCTG
LOC_Os06g18830
Os.53823.1.S1_at--1050--7671Chr06:10689864..10689888 (25 bp)
GGGTTTTCACATGTAGTGTCTTGCA
LOC_Os06g18830
Os.53823.1.S1_at--1015--10251Chr06:10689820..10689844 (25 bp)
TTTGTTTCTGTCAACATGTCCTGTT
LOC_Os06g18830
Os.53823.1.S1_at--876--2111Chr06:10689807..10689831 (25 bp)
ACATGTCCTGTTTTTCTTGAAGTAA
LOC_Os06g18830
Os.53823.1.S1_at--303--7391Chr06:10689724..10689748 (25 bp)
GTGAGTCAAAGAAAGGCCGCCACTT
LOC_Os06g18830
Target Sequence 
GAAACCGTGCAACACTGTTCAACGTCATTGGCCAGCCGCTGCGCTTCCCTGAATACCCGGTTGTGAGCTTCTCGGCAAGA
GATCTAATTAGGGGCCTGCTCGTCAAGGAGCCCCAACAAAGATTGGGTTGTAAGCGTGGTGCCACTGAGATAAAACAGCA
TCCATTTTTTGAGGGTGTGAACTGGGCATTGATACGCTGCGCAAGCCCTCCAGAGGTTCCCAGGCCTGTTGAGATTGAGA
GGCCTCCAAAGCAACCTGTTTCAACATCGGAGCCTGCTGCTGCCCCTTCTGATGCTGCCCAGAAAAGCAGTGATAGCTAT
CTAGAATTCGATTTCTTTTAGGACTCAATAATTTTTTTTTCCATTTGTTTGCATCATCTTGAGTAGGGTTTTCACATGTA
GTGTCTTGCAGATTAGTATGTAGATTTTTTTTTGTTTCTGTCAACATGTCCTGTTTTTCTTGAAGTAAACTTATTGGCAT
TCAGATTTATATTTCTCAGCAAAGATCTGAAATGGTTAATCTTCAAGTGAGTCAAAGAAAGGCCGCCACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis