Browse Element(s) Details


Os.52704.1.S1_at

Description gb:AK068835.1
DB_XREF= gi:32978860
TID=Os.52704.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158G20, full insert sequence.
FL= gb:AK068835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1882010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g18790NANA6+10658719..10659690Flavonol 3-O-glucosyltransferase 5, putative
LOC_Os06g18800Os.45173.5.S1_x_at4/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18800Os.45173.1.S1_x_at3/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18800OsAffx.20877.1.S1_at1/116+10663616..10671486retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g18810OsAffx.23523.5.S1_at11/116+10679072..10682213hypothetical protein
LOC_Os06g18810OsAffx.4928.1.S1_at1/116+10679072..10682213hypothetical protein
LOC_Os06g18810Os.51646.1.S1_at1/116+10679072..10682213hypothetical protein
LOC_Os06g18820OsAffx.15484.1.S1_at11/116+10684597..10689032expressed protein
LOC_Os06g18820Os.52704.1.S1_at10/116+10684597..10689032expressed protein
LOC_Os06g18830Os.53823.1.S1_at11/116+10689712..10693168Protein kinase G11A, putative, expressed
LOC_Os06g18840NANA6+10703924..10706572retrotransposon protein, putative, LINE subclass
LOC_Os06g18850OsAffx.27693.1.S1_at11/116+10708310..10713424hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52704.1.S1_at--39--5851Chr06:10687127..10687151 (25 bp)
GACCAGTACAGTGAGATTCCGTTCT
LOC_Os06g18820
Os.52704.1.S1_at--153--6051Chr06:10687139..10687163 (25 bp)
GAGATTCCGTTCTCGTAGCTTTTTT
LOC_Os06g18820
Os.52704.1.S1_at--121--10371Chr06:10687164..10687188 (25 bp)
TTTTTTCTTTGACACTCGCACAGCA
LOC_Os06g18820
Os.52704.1.S1_at--965--3791Chr06:10687178..10687202 (25 bp)
CTCGCACAGCAATTCATCGTTGATT
LOC_Os06g18820
Os.52704.1.S1_at--433--9111Chr06:10687202..10687226 (25 bp)
TGCTGAATGATGCAGACAGGCCATT
LOC_Os06g18820
Os.52704.1.S1_at--428--6891Chr06:10687322..10687346 (25 bp)
GTATAACTCTCATTTTAGGCTAGCT
LOC_Os06g18820
Os.52704.1.S1_at--648--3411Chr06:10687403..10687427 (25 bp)
CATAACTCTGAAGAAACCGTTCGGT
LOC_Os06g18820
Os.52704.1.S1_at--505--1091Chr06:10687442..10687466 (25 bp)
AGGGCGCGCAGGATCTATATTTAAA
LOC_Os06g18820
Os.52704.1.S1_at--616--5671NONE
GACATCATAGTCACGGTTGAGTCTA
NONE
Os.52704.1.S1_at--126--10131Chr06:10687510..10687534 (25 bp)
TATGTTTCCTTCTAGCTTGAGTCGT
LOC_Os06g18820
Os.52704.1.S1_at--614--10211Chr06:10687542..10687566 (25 bp)
TATTAGGCTGCGTTTAAATCCAGGG
LOC_Os06g18820
Target Sequence 
GACCAGTACAGTGAGATTCCGTTCTCGTAGCTTTTTTTTTTTTCTTTGACACTCGCACAGCAATTCATCGTTGATTGCTG
AATGATGCAGACAGGCCATTCTTTGGCATGGCCAGATAGGGGAGCTGAGAAGGACGACTGCCTAGAGCTTAGGAAAACCC
AGGGCTTTCTGGTATATGCAGAGATATATACTGTTGTATAACTCTCATTTTAGGCTAGCTGAGCAATATAGATAACTCAC
CATACAGTAAAAAATGTTAAGAGCAAATCATCAGTACATAACTCTGAAGAAACCGTTCGGTTTTTCTGGAGGGATAGGGC
GCGCAGGATCTATATTTAAAGTCTTTTCATTTGGACATCATAGTCACGGTTGAGTCTAGGATTTATGTTTCCTTCTAGCT
TGAGTCGTTGTTAAATATTAGGCTGCGTTTAAATCCAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis