Browse Element(s) Details

OsAffx.27728.1.S1_at

Description

tigr:9634.m01967
TID=OsAffx.27728.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20260	11/11	expressed protein
LOC_Os03g42954	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20210	OsAffx.22940.1.S1_s_at	11/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20210	OsAffx.22940.2.S1_s_at	11/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20210	Os.35344.3.S1_x_at	10/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20210	OsAffx.22940.5.S1_at	10/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20210	OsAffx.22940.2.S1_at	9/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20210	OsAffx.22940.5.S1_x_at	9/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20210	Os.35344.18.S1_x_at	7/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20210	OsAffx.22940.3.S1_x_at	6/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20210	OsAffx.31552.2.S1_at	1/11	6	+	11593078..11600631	transposon protein, putative, Mutator sub-class
LOC_Os06g20219	Os.55476.1.S1_at	1/11	6	+	11607603..11608204	NA
LOC_Os06g20230	Os.40360.1.S1_at	9/11	6	+	11611768..11613493	hypothetical protein
LOC_Os06g20230	Os.40360.1.S1_x_at	8/11	6	+	11611768..11613493	hypothetical protein
LOC_Os06g20230	Os.40855.2.S1_x_at	3/11	6	+	11611768..11613493	hypothetical protein
LOC_Os06g20230	Os.40855.5.S1_x_at	1/11	6	+	11611768..11613493	hypothetical protein
LOC_Os06g20240	NA	NA	6	+	11617544..11618253	hypothetical protein
LOC_Os06g20250	OsAffx.24317.5.S1_x_at	2/11	6	+	11619379..11620166	retrotransposon, putative, centromere-specific
LOC_Os06g20260	OsAffx.27728.1.S1_at	11/11	6	+	11623801..11626173	expressed protein
LOC_Os06g20270	OsAffx.27729.1.S1_at	11/11	6	+	11629062..11630288	expressed protein
LOC_Os06g20280	OsAffx.15513.1.S1_at	11/11	6	+	11636291..11642315	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280	OsAffx.15513.1.S1_x_at	10/11	6	+	11636291..11642315	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280	OsAffx.8319.1.S1_x_at	3/11	6	+	11636291..11642315	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g20280	OsAffx.8319.1.S1_at	1/11	6	+	11636291..11642315	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27728.1.S1_at--852--817	1	Chr06:11624495..11624519 (25 bp)	GGAACTCTAGTATGCTTCCCATACA	LOC_Os06g20260
OsAffx.27728.1.S1_at--820--691	1	Chr06:11624486..11624510 (25 bp)	GTATGCTTCCCATACAACATGTATG	LOC_Os06g20260
OsAffx.27728.1.S1_at--825--33	1	Chr06:11624475..11624499 (25 bp)	ATACAACATGTATGATGAGCTAACA	LOC_Os06g20260
OsAffx.27728.1.S1_at--718--61	1	Chr06:11624461..11624485 (25 bp)	ATGAGCTAACATTCCAACTAAGTCC	LOC_Os06g20260
OsAffx.27728.1.S1_at--10--587	1	Chr06:11624459..11624483 (25 bp)	GAGCTAACATTCCAACTAAGTCCAC	LOC_Os06g20260
OsAffx.27728.1.S1_at--544--251	1	Chr06:11624454..11624478 (25 bp)	AACATTCCAACTAAGTCCACGTCAA	LOC_Os06g20260
OsAffx.27728.1.S1_at--562--405	1	Chr06:11624418..11624442 (25 bp)	CGAGGATTCAGGTTTTGGCAACTTA	LOC_Os06g20260
OsAffx.27728.1.S1_at--962--653	1	Chr06:11624414..11624438 (25 bp)	GATTCAGGTTTTGGCAACTTACTAA	LOC_Os06g20260
OsAffx.27728.1.S1_at--670--321	2	Chr06:11624331..11624355 (25 bp)	CAAGGAGAAGAAAGCCTTCACTATA	LOC_Os06g20260
OsAffx.27728.1.S1_at--923--555	1	Chr06:11624322..11624346 (25 bp)	GAAAGCCTTCACTATAAATGGTACC	LOC_Os06g20260
OsAffx.27728.1.S1_at--1022--429	1	Chr06:11624317..11624341 (25 bp)	CCTTCACTATAAATGGTACCTTCGT	LOC_Os06g20260

Target Sequence

GGAACTCTAGTATGCTTCCCATACAACATGTATGATGAGCTAACATTCCAACTAAGTCCACGTCAAAAGGAAGCTATCGA
GGATTCAGGTTTTGGCAACTTACTAAAGATTAACAAAATTTATATTGACCGAAACTTGTGCAATGCGATTACAAGAAGCT
ACGACAAGGAGAAGAAAGCCTTCACTATAAATGGTACCTTCGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis