Browse Element(s) Details


OsAffx.27754.1.S1_at

Description tigr:9634.m02120
TID=OsAffx.27754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2165011/11hypothetical protein
LOC_Os07g269501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21610OsAffx.29313.1.S1_at1/116+12463880..12469800transposon protein, putative, Mutator sub-class
LOC_Os06g21620OsAffx.15539.1.S1_at10/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.23402.1.A1_at7/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.53962.1.S1_at1/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21630OsAffx.4895.1.S1_at11/116+12476057..12477181hypothetical protein
LOC_Os06g21640OsAffx.447.1.S1_at10/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21640Os.52609.1.S1_at1/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21640OsAffx.22947.2.S1_x_at1/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21650OsAffx.27754.1.S1_at11/116+12489568..12489930hypothetical protein
LOC_Os06g21660Os.40360.1.S1_x_at1/116+12498021..12499451hypothetical protein
LOC_Os06g21670OsAffx.32344.1.S1_at5/116+12511115..12512338retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g21680OsAffx.26050.28.S1_s_at11/116+12512742..12513686hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27754.1.S1_at--21--7553Chr06:12489687..12489711 (25 bp)
GTGGCGGGCGAGCTCGCGGGAAGAA
LOC_Os06g21650
OsAffx.27754.1.S1_at--16--1671Chr06:12489728..12489752 (25 bp)
AGCGCCGGAAGAAGCTCTCGTTGGC
LOC_Os06g21650
OsAffx.27754.1.S1_at--729--4231Chr06:12489732..12489756 (25 bp)
CCGGAAGAAGCTCTCGTTGGCATCG
LOC_Os06g21650
OsAffx.27754.1.S1_at--410--9511Chr06:12489743..12489767 (25 bp)
TCTCGTTGGCATCGTGCCCGCTTCG
LOC_Os06g21650
OsAffx.27754.1.S1_at--443--4031Chr06:12489781..12489805 (25 bp)
CGTAGCAGTGGCTCGCTCTCGAGGC
LOC_Os06g21650
OsAffx.27754.1.S1_at--171--5391Chr06:12489806..12489830 (25 bp)
GAAGCAGCGGCGATCTTGCCTTGAG
LOC_Os06g21650
OsAffx.27754.1.S1_at--376--1631Chr06:12489811..12489835 (25 bp)
AGCGGCGATCTTGCCTTGAGACAGA
LOC_Os06g21650
OsAffx.27754.1.S1_at--868--8371Chr06:12489814..12489838 (25 bp)
GGCGATCTTGCCTTGAGACAGAGCA
LOC_Os06g21650
OsAffx.27754.1.S1_at--1146--4431Chr06:12489823..12489847 (25 bp)
GCCTTGAGACAGAGCAACGGTGCGC
LOC_Os06g21650
OsAffx.27754.1.S1_at--346--8352Chr07:15608216..15608322 (25 bp)
GGCTGGGCGGCTCGGACGTGTGCGG
LOC_Os07g26950
OsAffx.27754.1.S1_at--736--4471Chr06:12489876..12489900 (25 bp)
GCCTGGCCGGCCTCGTGGTGGAGCG
LOC_Os06g21650
Target Sequence 
GTGGCGGGCGAGCTCGCGGGAAGAAGCTGGGCGGCGGCACCAGCGCCGGAAGAAGCTCTCGTTGGCATCGTGCCCGCTTC
GCCTACCGCCGCCCCGTAGCAGTGGCTCGCTCTCGAGGCGAAGCAGCGGCGATCTTGCCTTGAGACAGAGCAACGGTGCG
CCGGCTGGGCGGCTCGGACGTGTGCGGCGGCCTGGCCGGCCTCGTGGTGGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis