Browse Element(s) Details


OsAffx.27822.1.S1_at

Description tigr:9634.m02531
TID=OsAffx.27822.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2553010/11expressed protein
LOC_Os12g259402/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os06g033002/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25490NANA6+14901564..14905195retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25500OsAffx.4936.1.S1_at10/116+14905525..14914483retrotransposon protein, putative, unclassified
LOC_Os06g25500Os.50255.1.S1_at6/116+14905525..14914483retrotransposon protein, putative, unclassified
LOC_Os06g25500Os.27790.2.A1_x_at4/116+14905525..14914483retrotransposon protein, putative, unclassified
LOC_Os06g25500OsAffx.20354.1.S1_at2/116+14905525..14914483retrotransposon protein, putative, unclassified
LOC_Os06g25500Os.26561.1.S1_at2/116+14905525..14914483retrotransposon protein, putative, unclassified
LOC_Os06g25500Os.46995.1.S1_x_at1/116+14905525..14914483retrotransposon protein, putative, unclassified
LOC_Os06g25500Os.49405.2.S1_x_at1/116+14905525..14914483retrotransposon protein, putative, unclassified
LOC_Os06g25510NANA6+14917278..14917625hypothetical protein
LOC_Os06g25520OsAffx.26476.3.S1_at10/116+14921637..14925142hypothetical protein
LOC_Os06g25520Os.41248.5.S1_x_at5/116+14921637..14925142hypothetical protein
LOC_Os06g25520Os.41248.2.A1_at4/116+14921637..14925142hypothetical protein
LOC_Os06g25520Os.23964.2.S1_x_at1/116+14921637..14925142hypothetical protein
LOC_Os06g25530OsAffx.27822.1.S1_x_at11/116+14929151..14931307expressed protein
LOC_Os06g25530OsAffx.27822.1.S1_at10/116+14929151..14931307expressed protein
LOC_Os06g25540OsAffx.27823.2.S1_at11/116+14932982..14936275hypothetical protein
LOC_Os06g25550OsAffx.27823.1.S1_at2/116+14936393..14940601retrotransposon protein, putative, unclassified
LOC_Os06g25560NANA6+14942017..14942616Zinc knuckle family protein
LOC_Os06g25570OsAffx.15611.1.S1_at11/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.1.S1_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.1.S1_x_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.2.S1_x_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.5.S1_x_at1/116+14945394..14948087hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27822.1.S1_at--1008--4251Chr06:14930417..14930858 (25 bp)
CCTACCCCATCGTCTGGTGCTCGCG
LOC_Os06g25530
OsAffx.27822.1.S1_at--773--6311Chr06:14931140..14931164 (25 bp)
GATGACTTCTCGTTGACGTCCTCAC
LOC_Os06g25530
OsAffx.27822.1.S1_at--902--673Chr06:14931141..14931165 (25 bp)
ATGACTTCTCGTTGACGTCCTCACT
LOC_Os06g25530
OsAffx.27822.1.S1_at--292--8932Chr06:14931142..14931166 (25 bp)
TGACTTCTCGTTGACGTCCTCACTC
LOC_Os06g25530
OsAffx.27822.1.S1_at--833--2051Chr06:14931144..14931168 (25 bp)
ACTTCTCGTTGACGTCCTCACTCGT
LOC_Os06g25530
OsAffx.27822.1.S1_at--43--3652Chr06:14931145..14931169 (25 bp)
CTTCTCGTTGACGTCCTCACTCGTG
LOC_Os06g25530
OsAffx.27822.1.S1_at--815--9391Chr06:14931149..14931173 (25 bp)
TCGTTGACGTCCTCACTCGTGGAAT
LOC_Os06g25530
OsAffx.27822.1.S1_at--908--4031Chr06:14931150..14931174 (25 bp)
CGTTGACGTCCTCACTCGTGGAATT
LOC_Os06g25530
OsAffx.27822.1.S1_at--854--6651Chr06:14931151..14931175 (25 bp)
GTTGACGTCCTCACTCGTGGAATTG
LOC_Os06g25530
OsAffx.27822.1.S1_at--100--10751Chr06:14931152..14931176 (25 bp)
TTGACGTCCTCACTCGTGGAATTGG
LOC_Os06g25530
Target Sequence 
CCTACCCCATCGTCTGGTGCTCGCGGCATAGGTCGCGAGATTGAGGAGGCGAAGGTGGCGGCGGCGGCGTCCGCGAACGA
ACGCGCCGACAAACTGGCGCGTGACCTGGCGGAGGTCCGGGAGGACCTCCAGAAGATGAGAGAGCTGGTGGCCGGCAACG
AGAGGCAGCAGCAGGGGCTCGAGCACCGCATGTCAGAGCTCGAGAACAACTTGTCGGAGATCCGCGGCTCGCTGCAGGTC
ACCTACACCGGTCTGCACCAGTTCACCGGGGAGTGCGGCGTCACGACCACCATCCCGGCGAACCCTGATGACTTCTCGTT
GACGTCCTCACTCGTGGAATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27822.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis