Browse Element(s) Details


OsAffx.27850.1.S1_at

Description tigr:9634.m02723
TID=OsAffx.27850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2849011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28440NANA6+16177851..16178333retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28450OsAffx.1196.1.S1_x_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28450OsAffx.1196.1.S1_at1/116+16178853..16182852retrotransposon protein, putative, unclassified
LOC_Os06g28460OsAffx.10528.1.S1_x_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28460Os.10959.1.S2_at1/116+16186334..16193212retrotransposon protein, putative, unclassified
LOC_Os06g28470OsAffx.27849.1.S1_at10/116+16194181..16194515hypothetical protein
LOC_Os06g28480Os.51853.1.S1_at11/116+16197180..16199062Leucine Rich Repeat family protein, expressed
LOC_Os06g28490OsAffx.27850.1.S1_at11/116+16202640..16203686Zinc knuckle family protein
LOC_Os06g28500NANA6+16204106..16205627retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g28510NANA6+16207405..16210078retrotransposon protein, putative, unclassified, expressed
LOC_Os06g28520OsAffx.27851.1.S1_at10/116+16216265..16218075hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27850.1.S1_at--448--6031Chr06:16203207..16203231 (25 bp)
GAGATGGCCCTAATCGTCAATAGAT
LOC_Os06g28490
OsAffx.27850.1.S1_at--231--8231Chr06:16203295..16203319 (25 bp)
GGCAATCCAAGCGAGCATGCTTCAA
LOC_Os06g28490
OsAffx.27850.1.S1_at--363--6931Chr06:16203329..16203353 (25 bp)
GTATGGCCATTTTATCGCGGATTGC
LOC_Os06g28490
OsAffx.27850.1.S1_at--225--4691Chr06:16203345..16203369 (25 bp)
GCGGATTGCCCCAAGACCAATGAAG
LOC_Os06g28490
OsAffx.27850.1.S1_at--1130--1431Chr06:16203391..16203415 (25 bp)
AGAAGCCTGATCGTGCTCATGTTGC
LOC_Os06g28490
OsAffx.27850.1.S1_at--681--1291Chr06:16203449..16203473 (25 bp)
AGATGAAGGCTCTCCCAAGGCTATG
LOC_Os06g28490
OsAffx.27850.1.S1_at--100--351Chr06:16203524..16203548 (25 bp)
ATCAACAAAGGAGCGCCTCTTCAAC
LOC_Os06g28490
OsAffx.27850.1.S1_at--447--9711Chr06:16203544..16203568 (25 bp)
TCAACATCTTGAGTGACGACGACAA
LOC_Os06g28490
OsAffx.27850.1.S1_at--629--3331Chr06:16203582..16203606 (25 bp)
CACTCGTGCTTCATGGACCATGGGC
LOC_Os06g28490
OsAffx.27850.1.S1_at--408--7571Chr06:16203603..16203627 (25 bp)
GGGCGCAAGGTAATGCCTATCCAAA
LOC_Os06g28490
OsAffx.27850.1.S1_at--1073--571Chr06:16203621..16203645 (25 bp)
ATCCAAAAGCCCTCTCTTGATGATG
LOC_Os06g28490
Target Sequence 
GAGATGGCCCTAATCGTCAATAGATTCAAGCACTTCCTTCGCAAGAGTGGATATGGGAAAGGAAGAAAGGAAGATGACAA
GGGCAAGAGGCAATCCAAGCGAGCATGCTTCAAATGTGGCGAGTATGGCCATTTTATCGCGGATTGCCCCAAGACCAATG
AAGCAAAGCACAAGGTGGTCAAGAAGAAGCCTGATCGTGCTCATGTTGCGGAGGCACACATGGCGGAAGTGTGGTACTCC
GGAGATGAAGGCTCTCCCAAGGCTATGGAGAAGGGAGATGGAGATGGTGGCGTGGCTACTGTCGCCATCAAGTCCTCATC
AACAAAGGAGCGCCTCTTCAACATCTTGAGTGACGACGACAACGACTCCTACCACCACTCGTGCTTCATGGACCATGGGC
GCAAGGTAATGCCTATCCAAAAGCCCTCTCTTGATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis