Browse Element(s) Details


OsAffx.27924.1.S1_at

Description tigr:9634.m03208
TID=OsAffx.27924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3411011/11hypothetical protein
LOC_Os01g259602/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34060OsAffx.15722.1.S1_at10/116+19832829..19836069hypothetical protein
LOC_Os06g34070Os.19118.2.S1_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34070Os.19118.2.S1_x_at11/116+19838362..19841723GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34080NANA6+19843398..19843700hypothetical protein
LOC_Os06g34090NANA6+19844505..19848821retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g34100OsAffx.4997.2.S1_at10/116+19853120..19855538hypothetical protein
LOC_Os06g34110OsAffx.27924.1.S1_at11/116+19859601..19859875hypothetical protein
LOC_Os06g34120Os.7940.1.S1_at11/116+19865075..19869007GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g34129NANA6+19879521..19880064NA
LOC_Os06g34140OsAffx.22699.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34140OsAffx.8201.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34140OsAffx.18275.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27924.1.S1_at--966--4371Chr06:19859631..19859655 (25 bp)
CCAACTATAGATCTTCGATTGTTTG
LOC_Os06g34110
OsAffx.27924.1.S1_at--326--6431Chr06:19859640..19859664 (25 bp)
GATCTTCGATTGTTTGATGAGCTTG
LOC_Os06g34110
OsAffx.27924.1.S1_at--782--10771Chr06:19859653..19859677 (25 bp)
TTGATGAGCTTGGAGGCAAACCCTT
LOC_Os06g34110
OsAffx.27924.1.S1_at--895--8571Chr06:19859657..19859681 (25 bp)
TGAGCTTGGAGGCAAACCCTTCGGT
LOC_Os06g34110
OsAffx.27924.1.S1_at--953--1531Chr06:19859659..19859683 (25 bp)
AGCTTGGAGGCAAACCCTTCGGTCT
LOC_Os06g34110
OsAffx.27924.1.S1_at--90--3651Chr06:19859675..19859699 (25 bp)
CTTCGGTCTTCATTACACAGCTTCG
LOC_Os06g34110
OsAffx.27924.1.S1_at--972--7791Chr06:19859679..19859703 (25 bp)
GGTCTTCATTACACAGCTTCGCCCA
LOC_Os06g34110
OsAffx.27924.1.S1_at--759--131Chr06:19859686..19859706 (21 bp)
ATTACACAGCTTCGCCCAGGTCGGT
LOC_Os06g34110
OsAffx.27924.1.S1_at--1062--1811Chr06:19859691..19859825 (25 bp)
ACAGCTTCGCCCAGGTCGGTCGAAG
LOC_Os06g34110
OsAffx.27924.1.S1_at--994--4317Chr11:10196640..10196664 (24 bp)
CCAGGTCGGTCGAAGGCCCTCGTGA
NONE
OsAffx.27924.1.S1_at--1145--3954Chr06:19859817..19859841 (25 bp)
CGGTCGAAGGCCCTCGTGAGCTTTG
LOC_Os06g34110
Target Sequence 
CCAACTATAGATCTTCGATTGTTTGATGAGCTTGGAGGCAAACCCTTCGGTCTTCATTACACAGCTTCGCCCAGGTCGGT
CGAAGGCCCTCGTGAGCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis