Browse Element(s) Details


OsAffx.27968.1.S1_at

Description tigr:9634.m03503
TID=OsAffx.27968.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pyridoxal-phosphate dependent enzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g368307/11Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g368201/11Cysteine synthase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36790OsAffx.27967.1.S1_at11/116+21670240..21670560hypothetical protein
LOC_Os06g36800OsAffx.15784.1.S1_at11/116+21676678..21682941MBOAT family protein
LOC_Os06g36810Os.55116.1.S1_at11/116+21684270..21685013expressed protein
LOC_Os06g36820OsAffx.27968.1.S1_at1/116+21691503..21691822Cysteine synthase, putative
LOC_Os06g36830OsAffx.27968.1.S1_at7/116+21694605..21698564Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36840Os.2259.1.S1_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36840Os.2259.1.S1_s_at11/116+21699487..21702433Cysteine synthase, putative, expressed
LOC_Os06g36850OsAffx.15785.1.S1_at10/116+21707954..21713109Pyridoxal-phosphate dependent enzyme family protein
LOC_Os06g36859NANA6+21720468..21721811transposon protein, putative, Pong sub-class
LOC_Os06g36870NANA6+21722223..21724393transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006535biological_processcysteine biosynthesis from serine
GO:0019344biological_processcysteine biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009536cellular_componentplastid
GO:0004124molecular_functioncysteine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27968.1.S1_at--361--9252Chr09:2689885..2689909 (25 bp)
TCCTCTCTGGCGGTGCTTGGTTGGA
NONE
OsAffx.27968.1.S1_at--896--6151Chr06:21694771..21694795 (25 bp)
GAGGTTGTCCGAATAGCTTCTCGAT
LOC_Os06g36830
OsAffx.27968.1.S1_at--737--9992Chr09:2689921..2689945 (25 bp)
TAGCTTCTCGATCCCAACGGAGGAG
NONE
OsAffx.27968.1.S1_at--186--1371Chr06:21694723..21694747 (25 bp)
AGAGCAGCTCTTCGTTCTGGAGGAA
LOC_Os06g36830
OsAffx.27968.1.S1_at--1004--10612Chr05:15855296..15855315 (20 bp)
TTCGTTCTGGAGGAATCGTCGTGGT
NONE
OsAffx.27968.1.S1_at--526--511Chr06:21694699..21694723 (25 bp)
ATCGTCGTGGTGATCTGGATATGGC
LOC_Os06g36830
OsAffx.27968.1.S1_at--1092--7951Chr06:21694644..21694668 (25 bp)
GGATCACACGGCTATGTGGCCACGG
LOC_Os06g36830
OsAffx.27968.1.S1_at--79--4871NONE
GCTATGTGGCCACGGCTTTTCTTTT
NONE
OsAffx.27968.1.S1_at--245--7891Chr06:21691912..21691936 (25 bp)
GGTTCACCAGGTTTTCACAAGATTC
NONE
OsAffx.27968.1.S1_at--555--7051Chr06:21691822..21691846 (25 bp)
GTAAGCTCGGAGGAATCCATAACAA
NONE
OsAffx.27968.1.S1_at--857--1291Chr06:21691576..21691600 (25 bp)
AGATGATTGTTACAATGCTGCCGAG
LOC_Os06g36820
Target Sequence 
TCCTCTCTGGCGGTGCTTGGTTGGAGTGGAGGTTGTCCGAATAGCTTCTCGATCCCAACGGAGGAGCCGAGAAAGGAGAG
CAGCTCTTCGTTCTGGAGGAATCGTCGTGGTGATCTGGATATGGCGAGGCGGCGCGACGGGGATATAGGGATGGGGGATC
ACACGGCTATGTGGCCACGGCTTTTCTTTTTTTACGTTGTTTCTGGTGGTTCACCAGGTTTTCACAAGATTCAAGGCACT
GGGCCAGGTTTCATACCGGAAAATTTGGATAGATCTATCATCGATGAAGTTGTGACCGTAAGCTCGGAGGAATCCATAAC
AATGGCCAGAAGGCTTGCAAAGGAGGAGGGGCTGCTTGTTGGCATATCTTCTGGTGCAAATGTGTCTGCTTGCATCAAGA
TTGCAGCTAGAGAGGAGAACAAGGGTAAGATGATTGTTACAATGCTGCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27968.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis