Browse Element(s) Details


OsAffx.28002.1.A1_at

Description tigr:9634.m03734
TID=OsAffx.28002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2510011/11transposon protein, putative, unclassified
LOC_Os09g1187010/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25080NANA4+14443156..14446199transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g25090NANA4+14461486..14467039retrotransposon protein, putative, unclassified
LOC_Os04g25100OsAffx.28002.1.A1_at11/114+14468101..14475922transposon protein, putative, unclassified
LOC_Os04g25100OsAffx.24317.6.S1_x_at11/114+14468101..14475922transposon protein, putative, unclassified
LOC_Os04g25100Os.48553.2.S1_x_at7/114+14468101..14475922transposon protein, putative, unclassified
LOC_Os04g25100Os.3920.1.S1_at2/114+14468101..14475922transposon protein, putative, unclassified
LOC_Os04g25100OsAffx.23650.1.S1_at1/114+14468101..14475922transposon protein, putative, unclassified
LOC_Os04g25110OsAffx.17852.1.S1_at11/114+14478019..14480319hypothetical protein
LOC_Os04g25120OsAffx.24317.5.S1_x_at6/114+14482875..14487239hypothetical protein
LOC_Os04g25120OsAffx.24317.3.S1_at4/114+14482875..14487239hypothetical protein
LOC_Os04g25130OsAffx.29982.1.S1_at6/114+14487371..14491445retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28002.1.A1_at--784--10614Chr04:14471583..14471607 (25 bp)
TTCGGTTCGCATCGGTTCACATCGT
LOC_Os04g25100
OsAffx.28002.1.A1_at--645--3953Chr04:14471585..14471609 (25 bp)
CGGTTCGCATCGGTTCACATCGTAG
LOC_Os04g25100
OsAffx.28002.1.A1_at--513--6714Chr04:14471587..14471610 (24 bp)
GTTCGCATCGGTTCACATCGTAGGC
LOC_Os04g25100
OsAffx.28002.1.A1_at--287--9353Chr04:14471589..14471610 (22 bp)
TCGCATCGGTTCACATCGTAGGCTA
LOC_Os04g25100
OsAffx.28002.1.A1_at--223--4953Chr04:14471591..14471631 (25 bp)
GCATCGGTTCACATCGTAGGCTATT
LOC_Os04g25100
OsAffx.28002.1.A1_at--648--473Chr04:14471593..14471633 (25 bp)
ATCGGTTCACATCGTAGGCTATTCC
LOC_Os04g25100
OsAffx.28002.1.A1_at--38--9413Chr04:14471594..14471634 (25 bp)
TCGGTTCACATCGTAGGCTATTCCT
LOC_Os04g25100
OsAffx.28002.1.A1_at--670--7893Chr04:14471596..14471636 (25 bp)
GGTTCACATCGTAGGCTATTCCTTC
LOC_Os04g25100
OsAffx.28002.1.A1_at--884--6753Chr04:14471597..14471637 (25 bp)
GTTCACATCGTAGGCTATTCCTTCC
LOC_Os04g25100
OsAffx.28002.1.A1_at--231--2093Chr04:14471601..14471641 (25 bp)
ACATCGTAGGCTATTCCTTCCCCGG
LOC_Os04g25100
OsAffx.28002.1.A1_at--550--6912Chr04:14471626..14471645 (20 bp)
GTAGGCTATTCCTTCCCCGGCGTCG
LOC_Os04g25100
Target Sequence 
TTCGGTTCGCATCGGTTCACATCGTAGGCTATTCCTTCCCCGGCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28002.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis