Browse Element(s) Details


OsAffx.28022.1.S1_x_at

Description tigr:9634.m03869
TID=OsAffx.28022.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to typical P-type R2R3 Myb protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4033011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g40260OsAffx.31869.5.S1_x_at1/116+23979278..23983699retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g40270Os.45173.1.S1_x_at1/116+23984808..23989178retrotransposon protein, putative, unclassified
LOC_Os06g40280OsAffx.7527.1.S1_x_at2/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.25754.2.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40280Os.53479.1.S1_x_at1/116+23989809..23992668retrotransposon protein, putative, unclassified
LOC_Os06g40290OsAffx.15858.1.S1_at11/116+23993611..23994355hypothetical protein
LOC_Os06g40300NANA6+23994715..23995490transposon protein, putative, unclassified
LOC_Os06g40310OsAffx.22896.1.S1_x_at1/116+23996654..23998642transposon protein, putative, unclassified
LOC_Os06g40320OsAffx.28021.1.S1_at11/116+24000342..24002191hypothetical protein
LOC_Os06g40330OsAffx.28022.1.S1_x_at11/116+24004153..24008358expressed protein
LOC_Os06g40330Os.22469.1.S1_at11/116+24004153..24008358expressed protein
LOC_Os06g40339NANA6+24013475..24013789NA
LOC_Os06g40348NANA6+24015153..24015455NA
LOC_Os06g40360Os.12403.1.S1_a_at11/116+24032808..24035795Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28022.1.S1_x_at--729--5691Chr06:24005041..24005065 (25 bp)
GACTTTGGCTCCCTGAGATCAGAAT
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--211--5471Chr06:24004954..24004978 (25 bp)
GAACTTGCAAATTCCCAAGGATCTT
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--690--6411Chr06:24004935..24004959 (25 bp)
GATCTTTTGATGCTTGTTTTCCTCG
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--327--6811Chr06:24004920..24004944 (25 bp)
GTTTTCCTCGTGTTCAATGCAATCA
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--330--3051Chr06:24004887..24004911 (25 bp)
AATCGAATGCTTTCTCTCTGAGTTC
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--43--6071Chr06:24004868..24004892 (25 bp)
GAGTTCTTCCTTTCCAATCATTGGT
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--421--8531Chr06:24004686..24004710 (25 bp)
TGGACCCTACTTTCTGGAGGCACGA
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--200--5231Chr06:24004646..24004670 (25 bp)
GAATTTGCCAGTTTATTGCCAGTTT
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--15--6831Chr06:24004625..24004649 (25 bp)
GTTTAACGAAGAATTGCCGCCCTCA
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--303--6311Chr06:24004546..24004570 (25 bp)
GATGAGACCAATCTAGCTGCTGCAG
LOC_Os06g40330
OsAffx.28022.1.S1_x_at--630--671Chr06:24004512..24004536 (25 bp)
ATGAACATGACCTTGAGGACCCCTG
LOC_Os06g40330
Target Sequence 
GACTTTGGCTCCCTGAGATCAGAATATCTCTCTCCAAACAACAATGGTCTGCTGGATGCATTGGTTCATGGAGGACATGG
ACAAGGGGAACTTGCAAATTCCCAAGGATCTTTTGATGCTTGTTTTCCTCGTGTTCAATGCAATCAAGTGATTCAATCGA
ATGCTTTCTCTCTGAGTTCTTCCTTTCCAATCATTGGTGATGATCTCCTCGAGAACAGTTGTCATGCTTTTGTTGGCATC
AACAATAATGCAAGCAGCCTATTCCTTGACAGCCAACCTCCACCCTTGGTGGACCCTACTTTCTGGAGGCACGATGTATC
ACTAGAACCGAATTTGCCAGTTTATTGCCAGTTTAACGAAGAATTGCCGCCCTCAAATGAGCAGTTTGCCAAAGATGCAG
ATGACGCTTTCGGTCATGGGGGTCTTTCTGATGAGACCAATCTAGCTGCTGCAGGTCAAGGCGATGAACATGACCTTGAG
GACCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28022.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis