Browse Element(s) Details


OsAffx.28025.2.S1_at

Description tigr:9631.m03587
TID=OsAffx.28025.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative HGWP repeat containing protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3743010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g37411Os.54064.1.S1_at11/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.5.S1_at5/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.41248.2.A1_at4/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.5.S1_x_at3/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.41248.5.S1_x_at2/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411OsAffx.31069.2.S1_x_at1/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37411Os.53479.1.S1_x_at1/113+20680018..20701948MATE efflux family protein, expressed
LOC_Os03g37430OsAffx.28025.2.S1_at10/113+20709434..20714568hypothetical protein
LOC_Os03g37440NANA3+20715418..20716337hypothetical protein
LOC_Os03g37444OsAffx.17914.1.S1_x_at1/113+20717745..20718205NA
LOC_Os03g37450Os.39427.1.A1_at11/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_x_at7/113+20719487..20721893hypothetical protein
LOC_Os03g37450OsAffx.28025.4.S1_at4/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.39427.1.A1_s_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37450Os.46592.1.S1_at1/113+20719487..20721893hypothetical protein
LOC_Os03g37460NANA3+20725170..20725484hypothetical protein
LOC_Os03g37470OsAffx.25398.1.S1_x_at11/113+20727305..20737288MATE efflux family protein, expressed
LOC_Os03g37470Os.55033.1.A1_at10/113+20727305..20737288MATE efflux family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28025.2.S1_at--252--8151Chr03:20711607..20711900 (25 bp)
GGAACTGATAAGTTCTGCTAATGCC
LOC_Os03g37430
OsAffx.28025.2.S1_at--1121--2451NONE
AACAAATAATGTGCAGGTGATTGGC
NONE
OsAffx.28025.2.S1_at--113--8831Chr03:20714249..20714273 (25 bp)
TGATTGGCGACATCGGAGTTGCAGA
LOC_Os03g37430
OsAffx.28025.2.S1_at--808--3431Chr03:20714270..20714294 (25 bp)
CAGATGGCAAGGGATGTGATCGTAC
LOC_Os03g37430
OsAffx.28025.2.S1_at--674--7651Chr03:20714280..20714304 (25 bp)
GGGATGTGATCGTACGTGCGCGACC
LOC_Os03g37430
OsAffx.28025.2.S1_at--21--1711Chr03:20714302..20714326 (25 bp)
ACCACTGCGGCGGACGGCATTGGTT
LOC_Os03g37430
OsAffx.28025.2.S1_at--1099--5731Chr03:20714314..20714338 (25 bp)
GACGGCATTGGTTCTAGGCCGCTAG
LOC_Os03g37430
OsAffx.28025.2.S1_at--895--4551Chr03:20714340..20714364 (25 bp)
GCGCCGGAGTCAGCAGCCTGTAGAT
LOC_Os03g37430
OsAffx.28025.2.S1_at--654--6091Chr03:20714346..20714370 (25 bp)
GAGTCAGCAGCCTGTAGATACGCCT
LOC_Os03g37430
OsAffx.28025.2.S1_at--744--1671Chr03:20714354..20714378 (25 bp)
AGCCTGTAGATACGCCTCTGGGTCA
LOC_Os03g37430
OsAffx.28025.2.S1_at--294--6951Chr03:20714359..20714383 (25 bp)
GTAGATACGCCTCTGGGTCACACCA
LOC_Os03g37430
Target Sequence 
GGAACTGATAAGTTCTGCTAATGCCAATGGTCGTCGTTTCAATCCATCTATACCATATGAACGCACAAATGCTAAGCAAC
TAAGTGAGGAAAGCTTAGGCAAAAGGTCCAGAACAAGTCAAATGAATGTGAAATCAATGGTCCCACGTGAGAATGTGACC
AATGAGGCTTATGTTTCTGAACAAGATGGTACTGATATTATGAATGGGTTTGTTCACAACCATGAGGAACCACATGCCAA
TGAGAATGCTATAACAAATAATGTGCAGGTGATTGGCGACATCGGAGTTGCAGATGGCAAGGGATGTGATCGTACGTGCG
CGACCACTGCGGCGGACGGCATTGGTTCTAGGCCGCTAGGGCGCCGGAGTCAGCAGCCTGTAGATACGCCTCTGGGTCAC
ACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28025.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis