Browse Element(s) Details


OsAffx.28054.1.S1_s_at

Description tigr:9634.m04044
TID=OsAffx.28054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4192011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41880OsAffx.5079.1.S1_at11/116+25117152..25125145Subtilisin N-terminal Region family protein, expressed
LOC_Os06g41890NANA6+25130761..25131535hypothetical protein
LOC_Os06g41900OsAffx.22940.1.S1_s_at11/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.2.S1_s_at11/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.5.S1_at11/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900Os.35344.3.S1_x_at10/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.5.S1_x_at10/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900Os.35344.18.S1_x_at10/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.3.S1_x_at9/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.22940.2.S1_at6/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41900OsAffx.31552.2.S1_at1/116+25132836..25140389transposon protein, putative, Mutator sub-class
LOC_Os06g41910Os.57084.1.S1_at10/116+25144629..25147011expressed protein
LOC_Os06g41920OsAffx.28054.1.S1_s_at11/116+25149784..25150239hypothetical protein
LOC_Os06g41930Os.17768.1.S1_at11/116+25157315..25163617zinc-binding family protein, putative, expressed
LOC_Os06g41930Os.24117.1.A1_at7/116+25157315..25163617zinc-binding family protein, putative, expressed
LOC_Os06g41930OsAffx.2636.1.S1_at2/116+25157315..25163617zinc-binding family protein, putative, expressed
LOC_Os06g41940Os.56329.1.S1_at2/116+25171096..25171896hypothetical protein
LOC_Os06g41950OsAffx.28055.1.S1_at11/116+25172498..25176364hypothetical protein
LOC_Os06g41950Os.52401.1.S1_at1/116+25172498..25176364hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28054.1.S1_s_at--112--1932Chr06:25150103..25150127 (25 bp)
ACGGTTGCGCAATCCACCTTGCCGG
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--633--3952Chr06:25150104..25150128 (25 bp)
CGGTTGCGCAATCCACCTTGCCGGG
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--57--7912Chr06:25150105..25150129 (25 bp)
GGTTGCGCAATCCACCTTGCCGGGA
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--285--6672Chr06:25150106..25150130 (25 bp)
GTTGCGCAATCCACCTTGCCGGGAG
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--556--10712Chr06:25150107..25150131 (25 bp)
TTGCGCAATCCACCTTGCCGGGAGA
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--467--9152Chr06:25150108..25150132 (25 bp)
TGCGCAATCCACCTTGCCGGGAGAG
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--696--4592Chr06:25150109..25150133 (25 bp)
GCGCAATCCACCTTGCCGGGAGAGG
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--898--4112Chr06:25150110..25150134 (25 bp)
CGCAATCCACCTTGCCGGGAGAGGA
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--927--5152Chr06:25150111..25150135 (25 bp)
GCAATCCACCTTGCCGGGAGAGGAG
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--441--3192Chr06:25150112..25150136 (25 bp)
CAATCCACCTTGCCGGGAGAGGAGA
LOC_Os06g41920
OsAffx.28054.1.S1_s_at--969--3012Chr06:25150113..25150137 (25 bp)
AATCCACCTTGCCGGGAGAGGAGAG
LOC_Os06g41920
Target Sequence 
ACGGTTGCGCAATCCACCTTGCCGGGAGAGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28054.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis