Browse Element(s) Details


OsAffx.28073.1.S1_at

Description tigr:9634.m04167
TID=OsAffx.28073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Z99707 receptor kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4317011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43120OsAffx.5088.1.S1_at11/116+25917415..25924038expressed protein
LOC_Os06g43120Os.6714.1.S1_a_at2/116+25917415..25924038expressed protein
LOC_Os06g43130Os.51825.1.S1_at11/116+25927040..25929626expressed protein
LOC_Os06g43140Os.50917.1.S1_at10/116+25931445..25933934expressed protein
LOC_Os06g43150NANA6+25935098..25940004retrotransposon protein, putative, unclassified
LOC_Os06g43160OsAffx.28072.1.S1_at11/116+25940643..25942656Exostosin family protein, expressed
LOC_Os06g43170OsAffx.28073.1.S1_at11/116+25945158..25948431transposon protein, putative, unclassified, expressed
LOC_Os06g43180Os.49183.1.S1_at9/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43180OsAffx.28074.1.S1_at1/116+25958474..25962255cyclase family protein, putative, expressed
LOC_Os06g43190Os.25528.1.A1_at11/116+25962878..25966412C2 domain containing protein, expressed
LOC_Os06g43200Os.11793.1.S1_at10/116+25966863..25969825zinc finger family protein, putative, expressed
LOC_Os06g43210Os.54197.1.S1_at11/116+25969878..25973647zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28073.1.S1_at--464--4591Chr06:25945975..25945999 (25 bp)
GCGACTTCGGCCTGGACCGGCTGCT
LOC_Os06g43170
OsAffx.28073.1.S1_at--125--5171Chr06:25945897..25945921 (25 bp)
GCAAGCGCTCGATGCACTCGACGAG
LOC_Os06g43170
OsAffx.28073.1.S1_at--260--9391Chr06:25945889..25945913 (25 bp)
TCGATGCACTCGACGAGCAGCCTGC
LOC_Os06g43170
OsAffx.28073.1.S1_at--443--5431Chr06:25945749..25945773 (25 bp)
GAACCTCAGGCCGAACACCAAGTGG
LOC_Os06g43170
OsAffx.28073.1.S1_at--106--851Chr06:25945742..25945766 (25 bp)
AGGCCGAACACCAAGTGGGACGTCT
LOC_Os06g43170
OsAffx.28073.1.S1_at--1111--9251Chr06:25945690..25945714 (25 bp)
TCCTCTCCGGGAGGGTCTACTCGGA
LOC_Os06g43170
OsAffx.28073.1.S1_at--747--1571Chr06:25945660..25945684 (25 bp)
AGCTCTGCCAGTGGCACGCCGGGTT
LOC_Os06g43170
OsAffx.28073.1.S1_at--258--5811Chr06:25945487..25945511 (25 bp)
GACGCCGTGCTGGTCCTCGATCGAA
LOC_Os06g43170
OsAffx.28073.1.S1_at--1017--8591Chr06:25945477..25945501 (25 bp)
TGGTCCTCGATCGAATACCTTGTTC
LOC_Os06g43170
OsAffx.28073.1.S1_at--420--4031Chr06:25945470..25945494 (25 bp)
CGATCGAATACCTTGTTCGTCTTCA
LOC_Os06g43170
OsAffx.28073.1.S1_at--888--10791Chr06:25945458..25945482 (25 bp)
TTGTTCGTCTTCATCTGCCTCAACC
LOC_Os06g43170
Target Sequence 
GCGACTTCGGCCTGGACCGGCTGCTCTCCGGCGAGGCCGTGCACCGGAGCACGGGCGCGTCGGCGAGGCTGTTCGGGAGC
AAGCGCTCGATGCACTCGACGAGCAGCCTGCCCGACCTGTCCCAGATGCCCGGCGCCGGCGCCAGCCCATGCGGGTCGTC
GTCTGCGGCGACGTCGGCCGCAGCCGCGGCCGCGCCGCCGCCGTACCAGGCGCCGGAGTGCCTCAAGAACCTCAGGCCGA
ACACCAAGTGGGACGTCTACTCCTTCGGCATGGTGCTCCTGGAGCTCCTCTCCGGGAGGGTCTACTCGGAGGTGGAGCTC
TGCCAGTGGCACGCCGGGTTCGTCGTCGAGGAGCGGAGCCGGCTGCTCCGCATGGCCGACCCGACGCTCCGCGGCGAGGC
CGACGGCAGGGAGGACGCCCTGCTCGCCTGCTTCAAGCTCGCCTTCGCCTGCTGCGCCATGGCGCCCGGCAAGAGGCCCG
CCATGAGGGACGCCGTGCTGGTCCTCGATCGAATACCTTGTTCGTCTTCATCTGCCTCAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis