Browse Element(s) Details


OsAffx.28160.1.S1_at

Description tigr:9634.m00106
TID=OsAffx.28160.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0205411/11F-box domain containing protein
LOC_Os06g476703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02010NANA6+572964..573323hypothetical protein
LOC_Os06g02019Os.10689.1.S1_at11/116+579671..585449Cytochrome P450 88A1, putative, expressed
LOC_Os06g02028OsAffx.4692.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028Os.12721.1.S1_at11/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02028OsAffx.4692.1.S1_x_at10/116+586544..591158EYA conserved domain containing protein, expressed
LOC_Os06g02040Os.31022.1.S1_at11/116+592578..593131Late embryogenesis abundant group 1 family protein, expressed
LOC_Os06g02054OsAffx.10373.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.28160.1.S1_x_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02054OsAffx.10373.1.S1_at11/116+596333..600697F-box domain containing protein
LOC_Os06g02070OsAffx.10371.1.S1_at11/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02070OsAffx.20604.2.S1_at2/116+605084..606675retrotransposon protein, putative, unclassified
LOC_Os06g02080OsAffx.15226.1.S1_at8/116+612912..613862hypothetical protein
LOC_Os06g02090OsAffx.15227.1.S1_s_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02090OsAffx.15227.2.S1_x_at11/116+615415..617865hAT family dimerisation domain containing protein
LOC_Os06g02100Os.49022.1.S1_at11/116+622552..625087F-box domain containing protein, expressed
LOC_Os06g02110Os.34056.1.S1_at11/116+625262..627762F-box domain containing protein, expressed
LOC_Os06g02110Os.55536.1.S1_at1/116+625262..627762F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28160.1.S1_at--1117--8012Chr06:599362..599386 (25 bp)
GGAGGAGACTCTAGCTTGCCATCCT
LOC_Os06g02054
OsAffx.28160.1.S1_at--853--972Chr06:599364..599388 (25 bp)
AGGAGACTCTAGCTTGCCATCCTCC
LOC_Os06g02054
OsAffx.28160.1.S1_at--78--9172Chr06:599826..599850 (25 bp)
TGCGCCTGCGCTGCGAGATAACCGA
LOC_Os06g02054
OsAffx.28160.1.S1_at--890--3971Chr06:600489..600513 (25 bp)
CGGTGACGGGTTGGGCGCGACGGCG
LOC_Os06g02054
OsAffx.28160.1.S1_at--236--4611Chr06:600511..600535 (25 bp)
GCGACGGGCGGAGCGATACTCCATT
LOC_Os06g02054
OsAffx.28160.1.S1_at--912--5751Chr06:600513..600537 (25 bp)
GACGGGCGGAGCGATACTCCATTGT
LOC_Os06g02054
OsAffx.28160.1.S1_at--701--1911Chr06:600514..600538 (25 bp)
ACGGGCGGAGCGATACTCCATTGTC
LOC_Os06g02054
OsAffx.28160.1.S1_at--941--7571Chr06:600516..600540 (25 bp)
GGGCGGAGCGATACTCCATTGTCAC
LOC_Os06g02054
OsAffx.28160.1.S1_at--415--4691Chr06:600518..600542 (25 bp)
GCGGAGCGATACTCCATTGTCACCG
LOC_Os06g02054
OsAffx.28160.1.S1_at--598--3951Chr06:600519..600543 (25 bp)
CGGAGCGATACTCCATTGTCACCGC
LOC_Os06g02054
OsAffx.28160.1.S1_at--878--5092Chr08:146633..146652 (20 bp)
GCACGAGGATGAGCCAGACGATGAA
NONE
Target Sequence 
GGAGGAGACTCTAGCTTGCCATCCTCCCNCCTCATTGTCCTGNGTTCGNGTCGACAACCANNNAATTTCATAGAANGTGA
TGAATTGCGCCTGCGCTGCGAGATAACCGAANATGACNNNNNAGCCGACAGGGCGAGGCGGGAGAGGATGAGGCCTGGCG
GCCAGCGACGTGGGAGACGGGGCAACGAGGCGGTGACGGGTTGGGCGCGACGGCGACGGGCGGAGCGATACTCCATTGTC
ACCGCCGGCGGTAGCACGTCGGCGCGGCTCCGTCGGCCAGACGCTGCAAGAACTAGCGGGAGTGCGCACGAGGATGAGCC
AGACGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis