Browse Element(s) Details


OsAffx.28197.1.S1_at

Description tigr:9634.m04911
TID=OsAffx.28197.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5025011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50200NANA6+30396269..30399164retrotransposon protein, putative, unclassified, expressed
LOC_Os06g50210OsAffx.5157.1.S1_at11/116+30400328..30402076hypothetical protein
LOC_Os06g50220Os.15039.1.S1_at11/116+30407670..30413526expressed protein
LOC_Os06g50230Os.4999.1.S1_at11/116+30416663..30417847expressed protein
LOC_Os06g50240OsAffx.16007.1.S1_at10/116+30419080..30420779Thaumatin protein, putative
LOC_Os06g50250OsAffx.28197.1.S1_at11/116+30421609..30422507hypothetical protein
LOC_Os06g50260OsAffx.21897.5.S1_x_at6/116+30423968..30426909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50270NANA6+30427226..30433336retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g50280OsAffx.28198.1.S1_at11/116+30433756..30436762F-box domain containing protein
LOC_Os06g50290NANA6+30438406..30442234transposon protein, putative, Pong sub-class
LOC_Os06g50300Os.12393.1.S1_at11/116+30443413..30449445Endoplasmin homolog precursor, putative, expressed
LOC_Os06g50300Os.12393.1.S2_a_at11/116+30443413..30449445Endoplasmin homolog precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28197.1.S1_at--902--251Chr06:30422448..30422472 (25 bp)
ATATGTCTTAACTAGTGCTCCGAAT
LOC_Os06g50250
OsAffx.28197.1.S1_at--782--10871Chr06:30422402..30422426 (25 bp)
TTGGCGCACTACTTGGAATTCACTC
LOC_Os06g50250
OsAffx.28197.1.S1_at--207--8211Chr06:30422388..30422412 (25 bp)
GGAATTCACTCCTCTACTGGAGGTG
LOC_Os06g50250
OsAffx.28197.1.S1_at--829--2871Chr06:30421876..30421900 (25 bp)
AAGGGAGGACTATCGCTTGAGCCGC
LOC_Os06g50250
OsAffx.28197.1.S1_at--781--2751Chr06:30421839..30421863 (25 bp)
AAGACGGTCTACATGAGCGGGTTTC
LOC_Os06g50250
OsAffx.28197.1.S1_at--1062--9411Chr06:30421816..30421840 (25 bp)
TCGGTGTTACCGTCCTCAGGAGGAG
LOC_Os06g50250
OsAffx.28197.1.S1_at--813--10311Chr06:30421783..30421807 (25 bp)
TTTCATCCTTGAGAATGCCGTTGCC
LOC_Os06g50250
OsAffx.28197.1.S1_at--343--3031Chr06:30421770..30421794 (25 bp)
AATGCCGTTGCCCTGGAGTTTATGT
LOC_Os06g50250
OsAffx.28197.1.S1_at--399--6051Chr06:30421755..30421779 (25 bp)
GAGTTTATGTCCATTGAACCCCACA
LOC_Os06g50250
OsAffx.28197.1.S1_at--274--6451Chr06:30421713..30421737 (25 bp)
GATCACTGTGATTTTTCCGACATTG
LOC_Os06g50250
OsAffx.28197.1.S1_at--1150--8091Chr06:30421655..30421679 (25 bp)
GGACGTCAGCGTGCTTCGGTAAACA
LOC_Os06g50250
Target Sequence 
ATATGTCTTAACTAGTGCTCCGAATACTTGTAAGGGAGTTGTTCAATTGGCGCACTACTTGGAATTCACTCCTCTACTGG
AGGTGCTAGAATGGCATATGTATTATTACAAGAAGTACAAATGTCGGGTTCGCAAGACCAAGGTAGCAAGGGAGGACTAT
CGCTTGAGCCGCCATGATCACCTCAAGACGGTCTACATGAGCGGGTTTCGGTGTTACCGTCCTCAGGAGGAGCTGGTCTA
TTTCATCCTTGAGAATGCCGTTGCCCTGGAGTTTATGTCCATTGAACCCCACACAATATTGGCTGATGATGATCACTGTG
ATTTTTCCGACATTGCTGAAGACAAGAAGATCAGAAAGTGGGCACGCCGGACGTCAGCGTGCTTCGGTAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis