Browse Element(s) Details


OsAffx.28209.3.S1_s_at

Description tigr:9634.m04988
TID=OsAffx.28209.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51210OsAffx.28207.1.S1_at11/116+30985741..30987363zinc finger family protein, putative
LOC_Os06g51220Os.12832.1.S1_a_at11/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51220Os.14431.1.S1_x_at1/116+30992256..30994284DNA-binding protein MNB1B, putative, expressed
LOC_Os06g51230NANA6+30996881..31002886expressed protein
LOC_Os06g51240Os.23648.1.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240Os.23648.1.S2_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51240OsAffx.28209.3.S1_s_at11/116+31007027..31010326expressed protein
LOC_Os06g51250Os.8291.1.A1_at11/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51250Os.8291.2.S1_at10/116+31012883..31020744EF hand family protein, expressed
LOC_Os06g51260Os.18955.1.S1_at11/116+31024947..31027986myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g51270OsAffx.28210.1.S1_at11/116+31032422..31047463callose synthase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28209.3.S1_s_at--617--9111Chr06:31009736..31009760 (25 bp)
TGCTGCCCAGCCAGTTGCTGAAAAA
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--277--2451Chr06:31009757..31009781 (25 bp)
AAAATCTGAGCTTCTTCCCTTCTGG
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--964--8251Chr06:31009819..31009843 (25 bp)
GGCAGCTGTTCTGTTCACACGGACA
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--895--8411Chr06:31009848..31009872 (25 bp)
GGCCGTCGTCGACCTGAATGAAAGC
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--847--5551Chr06:31009867..31009891 (25 bp)
GAAAGCGCATCTCAGCTTCAGCTTG
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--895--2231Chr06:31009908..31009932 (25 bp)
ACAATAACAGGTTGCCGGTTGCTCT
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--8--2212Chr06:31010069..31010093 (25 bp)
ACAACTCATGTACGCGTGTGTAGAA
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--697--6891Chr06:31010124..31010148 (25 bp)
GTATAGCCTCTGATTTTCTTGTGTG
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--716--4531Chr06:31010161..31010185 (25 bp)
GCCCGGCTTCCTGACATAGTATTGA
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--222--10071Chr06:31010193..31010217 (25 bp)
TAGTGCTTTACGTACATACCTGCTC
LOC_Os06g51240
OsAffx.28209.3.S1_s_at--269--5691Chr06:31010271..31010295 (25 bp)
GATCTACCCAACCAAAGCAAGTCTA
LOC_Os06g51240
Target Sequence 
TGCTGCCCAGCCAGTTGCTGAAAAATCTGAGCTTCTTCCCTTCTGGTTGTTGCCCGGTCAGTCCAGTTGCTGCTCGCTTT
TTCGGCAGCTGTTCTGTTCACACGGACAGCATGGCCGTCGTCGACCTGAATGAAAGCGCATCTCAGCTTCAGCTTGCCCT
GAATTTTGACCAACAATAACAGGTTGCCGGTTGCTCTGCTCTGTTCTGTTAATACAAATTCCTCTTGGTTGTTTGATATG
ATGATGATGAACATGCATGCAACAAGAAGAACAAACCTTCGCTCAAAAAGAAAAGATAAAAGAAATGAACTTGTCCATGG
AGAATATATATATACAACTCATGTACGCGTGTGTAGAAAGAAATATTGAAGATGTGCTATAGTATAATGTATAGCCTCTG
ATTTTCTTGTGTGGCTGACTGGTGGGCCCGGCTTCCTGACATAGTATTGAACATTTCTAGTGCTTTACGTACATACCTGC
TCTAAAGGATGCTGCAAGTGGGCATCATTATTCAGAGAGAAATGGTTTCAGATCTGATCTACCCAACCAAAGCAAGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28209.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis