Browse Element(s) Details


OsAffx.28215.1.S1_at

Description tigr:9634.m05035
TID=OsAffx.28215.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P-type R2R3 Myb protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1178010/11Myb-like DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11740Os.23073.1.S1_at11/116+6221593..6223682adenosine 5'-phosphosulfate reductase 3, putative, expressed
LOC_Os06g11750OsAffx.15375.1.S1_at9/116+6226814..6228558hypothetical protein
LOC_Os06g11760OsAffx.15376.1.S1_at11/116+6232137..6232575expressed protein
LOC_Os06g11770OsAffx.4802.1.S1_at11/116+6236709..6237081hypothetical protein
LOC_Os06g11780OsAffx.28215.1.S1_at10/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11780Os.57514.1.S1_x_at1/116+6239044..6240173Myb-like DNA-binding domain containing protein
LOC_Os06g11790Os.18671.1.S1_at11/116+6242662..6246718TLD family protein, expressed
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28215.1.S1_at--535--151Chr06:6239646..6239670 (25 bp)
ATTATCGAGCGACAACCGTGGGATG
LOC_Os06g11780
OsAffx.28215.1.S1_at--344--6751Chr06:6239700..6239724 (25 bp)
GTTCAGGCTGCCAAGCTCGAATACA
LOC_Os06g11780
OsAffx.28215.1.S1_at--656--2091Chr06:6239722..6239746 (25 bp)
ACATGCAATCACTGCTACATTCTGC
LOC_Os06g11780
OsAffx.28215.1.S1_at--662--111NONE
ATTCTGCAGTGTGCCATTGTGACCA
NONE
OsAffx.28215.1.S1_at--12--1031Chr06:6239845..6239869 (25 bp)
AGGTGCCTTCTTCAAGTGTCCCTGA
LOC_Os06g11780
OsAffx.28215.1.S1_at--930--5211Chr06:6239868..6239892 (25 bp)
GAATTAGCTGTACAGGTGCCTCACA
LOC_Os06g11780
OsAffx.28215.1.S1_at--406--3032Chr06:6239897..6239921 (25 bp)
AATGCCTAGCACTTCATTTGATCAG
LOC_Os06g11780
OsAffx.28215.1.S1_at--207--8511Chr06:6239927..6239951 (25 bp)
TGGCAAAACCAACCTGTTCTCAAAT
LOC_Os06g11780
OsAffx.28215.1.S1_at--781--4891Chr06:6240010..6240034 (25 bp)
GCTTGTTGGTCCCTGAAAACTCCAT
LOC_Os06g11780
OsAffx.28215.1.S1_at--691--5191Chr06:6240103..6240127 (25 bp)
GCAATAGTATTCCACTGCCCAGTTG
LOC_Os06g11780
OsAffx.28215.1.S1_at--194--4551Chr06:6240119..6240143 (25 bp)
GCCCAGTTGGTCTGAAATCCTACTT
LOC_Os06g11780
Target Sequence 
ATTATCGAGCGACAACCGTGGGATGGCCACATTGAGGGCCTGCAGACTGTGGCAGTTCAGGCTGCCAAGCTCGAATACAT
GCAATCACTGCTACATTCTGCAGTGTGCCATTGTGACCAGCCCCACCACCACCACCACCACCAGCAGCTTAAACACCTTC
ACCACCGAACTGGAGCAGACCAACCACCTATGCCCTCCACAGGTGCCTTCTTCAAGTGTCCCTGAATTAGCTGTACAGGT
GCCTCACAGCCAAATGCCTAGCACTTCATTTGATCAGGAAATTGGCAAAACCAACCTGTTCTCAAATAACATTGTCAATG
GCAATGAGTGGTGCAGCATGGAGGCAGATAACAGCAGCCAGAAAAGCTTGTTGGTCCCTGAAAACTCCATTCCACCACTC
ATTGACATGCCAGTGCAAAACTTTTGTAATACTATCAGCACACCAAACTGTGACGGCGGCAATAGTATTCCACTGCCCAG
TTGGTCTGAAATCCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis