Browse Element(s) Details


OsAffx.28228.1.S1_x_at

Description tigr:9635.m00116
TID=OsAffx.28228.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0211011/11expressed protein
LOC_Os01g563701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02070Os.47130.4.A1_x_at5/117+644519..646561retrotransposon protein, putative, unclassified
LOC_Os07g02080NANA7+655468..655809hypothetical protein
LOC_Os07g02090Os.25566.1.S1_at11/117+657076..661498calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g02100Os.32504.2.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02100Os.32504.1.S1_at11/117+662917..665400Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02110OsAffx.28228.1.S1_x_at11/117+666043..667680expressed protein
LOC_Os07g02120NANA7+671472..673066Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02130NANA7+675800..677206flavin-containing monooxygenase family protein, putative
LOC_Os07g02140OsAffx.16039.1.S1_at11/117+683770..685521Flavin-binding monooxygenase-like family protein, expressed
LOC_Os07g02150OsAffx.28229.1.S1_x_at8/117+686363..6868423'-5' exonuclease family protein
LOC_Os07g02170OsAffx.28231.1.S1_x_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02170OsAffx.28231.1.S1_at11/117+690169..6909123'-5' exonuclease domain-containing protein, putative
LOC_Os07g02180NANA7+691715..6932053'-5' exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28228.1.S1_x_at--542--7691Chr07:666919..666943 (25 bp)
GGGTAGGACGGTGGCCACACGTGTG
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--922--7991Chr07:666978..667002 (25 bp)
GGAGGGCCGCGACTACCGACGGGAG
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--402--7551Chr07:667168..667192 (25 bp)
GTGGCCACGTGTGCGGCAGCGGCAG
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--532--9651Chr07:667242..667266 (25 bp)
TCAGAGGAGGTGGAACCAATGGCCT
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--1017--8171Chr07:667253..667277 (25 bp)
GGAACCAATGGCCTGGTCGGCATCT
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--85--3911Chr07:667265..667289 (25 bp)
CTGGTCGGCATCTCGGCATGCGCAA
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--40--2671Chr07:667298..667322 (25 bp)
AAGCGGCGGTTCTGGGCACCAATCC
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--384--7291Chr07:667349..667373 (25 bp)
GTGCCGGCGGCGCAAACAGCACCGG
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--58--9314Chr07:667378..667402 (25 bp)
TCCCTTCCCAGATCTGGACGGAAGA
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--179--5871Chr07:667406..667430 (25 bp)
GAGCCGGCTAGCAGCTACGGCAAAG
LOC_Os07g02110
OsAffx.28228.1.S1_x_at--1062--4231Chr07:667409..667433 (25 bp)
CCGGCTAGCAGCTACGGCAAAGGCG
LOC_Os07g02110
Target Sequence 
GGGTAGGACGGTGGCCACACGTGTGGCGGTGGCGGCGGCGGCGGCGGGAGGTTGCCAGCGGAGGGCCGCGACTACCGACG
GGAGGCGGAGGTTGGCGGCGGGTGGTGGCGGAGGAGGGCGGCGGCCGCTCCCGGACCCTCCCTCCCTCCCAGATCTGGCC
CGAGGGGGGCGTGGGGAGGGCAGTGGCCGGCGGCGCTCCCCTCCCTCGCTCCCTCCCAGATCTGGCCTAAGGGGGGTGGG
GGGAGGGCGGTGGCCACGTGTGCGGCAGCGGCAGCGGCGGGAGGTTGGCGGTGGCAGGAGGAAGGGGGCCGTGCGCGGCG
GCGTCAGAGGAGGTGGAACCAATGGCCTGGTCGGCATCTCGGCATGCGCAAGGAGGAGGAAGCGGCGGTTCTGGGCACCA
ATCCTCTCCCTTCCTTCGCCCCAGACGTCGGTGCCGGCGGCGCAAACAGCACCGGCCGCTCCCTTCCCAGATCTGGACGG
AAGAGGGGAGCCGGCTAGCAGCTACGGCAAAGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28228.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis