Browse Element(s) Details


OsAffx.28243.1.S1_at

Description tigr:9635.m00233
TID=OsAffx.28243.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0321011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03160OsAffx.16062.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160OsAffx.16061.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03160Os.5896.1.S1_at11/117+1226821..1236455Phospholipase A-2-activating protein, putative, expressed
LOC_Os07g03170Os.56093.1.S1_at11/117+1238103..1238925expressed protein
LOC_Os07g03180Os.4624.1.S1_at11/117+1243744..1244547expressed protein
LOC_Os07g03190OsAffx.28242.1.S1_at11/117+1247236..1248366expressed protein
LOC_Os07g03200Os.12206.1.S1_at9/117+1253347..1253967Phytosulfokines 4 precursor, putative, expressed
LOC_Os07g03210OsAffx.28243.1.S1_at11/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.22040.1.S1_x_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03210OsAffx.23030.1.S1_s_at1/117+1258652..1263749hypothetical protein
LOC_Os07g03220OsAffx.28244.1.S1_at11/117+1266274..1266849bZIP transcription factor family protein, expressed
LOC_Os07g03230Os.48081.1.S1_at11/117+1272854..1277016Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28243.1.S1_at--378--6211Chr07:1260938..1260962 (25 bp)
GAGGCTTTTGGCATTGATCTCTGCA
LOC_Os07g03210
OsAffx.28243.1.S1_at--231--771Chr07:1260898..1260922 (25 bp)
ATGTCTTCTTGAGTGTCTTCTCTTT
LOC_Os07g03210
OsAffx.28243.1.S1_at--886--5471Chr07:1260405..1260429 (25 bp)
GAACAGGTCCTTAGCTATTAGATTG
LOC_Os07g03210
OsAffx.28243.1.S1_at--985--831Chr07:1260308..1260332 (25 bp)
ATGGACAATGCACCAACTGCTGCAG
LOC_Os07g03210
OsAffx.28243.1.S1_at--630--1191Chr07:1260209..1260233 (25 bp)
AGTATGCTTTGTGGGCTGGAATTTC
LOC_Os07g03210
OsAffx.28243.1.S1_at--587--8011Chr07:1260169..1260193 (25 bp)
GGAGGCCCATTCGATTCACAGAAAC
LOC_Os07g03210
OsAffx.28243.1.S1_at--86--3271Chr07:1260129..1260153 (25 bp)
CAACTATGCATGCTCTTTCAGTCAC
LOC_Os07g03210
OsAffx.28243.1.S1_at--433--10331Chr07:1260117..1260138 (22 bp)
TTTCAGTCACCTCTTGCAACAGCTG
LOC_Os07g03210
OsAffx.28243.1.S1_at--895--3832Chr12:4603466..4603490 (25 bp)
CTGCTCAGGATGTCGATTGCTTTTT
NONE
OsAffx.28243.1.S1_at--404--2432Chr07:5135172..5135196 (23 bp)
AAAATCTTTTCGCTGGCGGTTCTCT
NONE
OsAffx.28243.1.S1_at--306--10552Chr07:1258686..1258710 (25 bp)
TTCTCTTAAGGGTCCGCCTGCGAAA
LOC_Os07g03210
Target Sequence 
GAGGCTTTTGGCATTGATCTCTGCATCTGCATGTTGACACATGTCTTCTTGAGTGTCTTCTCTTTAGTGAAACGGGAAAC
CGAGCAGCATGCATATATGGGTGTGATGTTGAGGAATGAGGACGATGGTTCAGATATGCAGGTTGAAAATGGCATCAAAG
TGAACAGGTCCTTAGCTATTAGATTGGCTATAGATGAATTGGAGCTAGTAGTGGGCTATACTATTAAACTTGCTCTTATT
GAAATGGGACAGTGCAGAATGGACAATGCACCAACTGCTGCAGCAAACAGAAGAGTGCATGAAATTGCATACAGATTCAG
AGATGCAGACAAAGCAGATGGAGAGGAGATAGATAGTAGTATGCTTTGTGGGCTGGAATTTCTTTTTAGCAATAATTGGA
GGCCCATTCGATTCACAGAAACTGTTGCATATGCCCCCAACTATGCATGCTCTTTCAGTCACCTCTTGCAACAGCTGCTC
AGGATGTCGATTGCTTTTTTTTATTGGGAAAAAATCTTTTCGCTGGCGGTTCTCTTAAGGGTCCGCCTGCGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28243.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis