Browse Element(s) Details


OsAffx.28253.2.S1_at

Description gb:NM_186219.1
DB_XREF= gi:34899523
GEN=OJ1606_D04.20
TID=OsAffx.28253.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative receptor-type protein kinase LRK1 (OJ1606_D04.20), mRNA.
PROD=putative receptor-type protein kinase LRK1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0389011/11lectin receptor kinase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03900OsAffx.5196.1.S1_at11/117+1629523..1631553Lectin receptor-type protein kinase, putative
LOC_Os07g03910NANA7+1635181..1636717Hexose carrier protein HEX6, putative
LOC_Os07g03920Os.45971.1.S1_x_at8/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03920Os.45971.1.S1_at5/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03930OsAffx.22504.1.S1_at11/117+1645313..1647256Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28253.2.S1_at--501--6331Chr07:1625263..1625287 (25 bp)
GATGCAGATGAGGTATGTCTTGTGT
LOC_Os07g03890
OsAffx.28253.2.S1_at--1113--6911Chr07:1625251..1625275 (25 bp)
GTATGTCTTGTGTTAAAGCTGGGTT
LOC_Os07g03890
OsAffx.28253.2.S1_at--195--2691Chr07:1625236..1625260 (25 bp)
AAGCTGGGTTTACTGTGTGCACATC
LOC_Os07g03890
OsAffx.28253.2.S1_at--78--5091Chr07:1625218..1625242 (25 bp)
GCACATCCATTTTGCAAATCAAGGC
LOC_Os07g03890
OsAffx.28253.2.S1_at--656--2211Chr07:1625203..1625227 (25 bp)
AAATCAAGGCCCAGTATGCGGCAAG
LOC_Os07g03890
OsAffx.28253.2.S1_at--169--7771Chr07:1625161..1625185 (25 bp)
GGTGACAAACCACTCCCAGAGTTGA
LOC_Os07g03890
OsAffx.28253.2.S1_at--342--3331Chr07:1625151..1625175 (25 bp)
CACTCCCAGAGTTGATGCCAACAAA
LOC_Os07g03890
OsAffx.28253.2.S1_at--734--4991Chr07:1625115..1625139 (25 bp)
GCATGTTGGCTGTAATGCAGAACAA
LOC_Os07g03890
OsAffx.28253.2.S1_at--337--5051Chr07:1625099..1625123 (25 bp)
GCAGAACAAAGGTTTCGAGCAATAT
LOC_Os07g03890
OsAffx.28253.2.S1_at--655--5951Chr07:1625083..1625107 (25 bp)
GAGCAATATACATCATTGCCTTCCA
LOC_Os07g03890
OsAffx.28253.2.S1_at--387--4451Chr07:1625066..1625090 (25 bp)
GCCTTCCATAGCAAGCAGCAGTGAC
LOC_Os07g03890
Target Sequence 
GATGCAGATGAGGTATGTCTTGTGTTAAAGCTGGGTTTACTGTGTGCACATCCATTTTGCAAATCAAGGCCCAGTATGCG
GCAAGTCATGCAATACCTTGATGGTGACAAACCACTCCCAGAGTTGATGCCAACAAACTTGAGTTACAGCATGTTGGCTG
TAATGCAGAACAAAGGTTTCGAGCAATATACATCATTGCCTTCCATAGCAAGCAGCAGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28253.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis