Browse Element(s) Details


OsAffx.2826.1.S1_at

Description tigr:9630.m03055
TID=OsAffx.2826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3227011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g32210Os.55268.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210OsAffx.24532.1.S1_at10/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57515.1.A1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32210Os.57189.1.S1_at1/112+19020648..19026474hypothetical protein
LOC_Os02g32220Os.54381.1.S1_at2/112+19028471..19029896retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32230Os.33351.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32230Os.54015.1.S1_at11/112+19030122..19035145retrotransposon protein, putative, unclassified, expressed
LOC_Os02g32240NANA2+19035360..19035665hypothetical protein
LOC_Os02g32250Os.46107.1.S2_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_x_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S1_s_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32250Os.46107.1.S2_a_at11/112+19038941..19044888retrotransposon, putative, centromere-specific, expressed
LOC_Os02g32270OsAffx.2826.1.S1_at11/112+19048045..19048578hypothetical protein
LOC_Os02g32280OsAffx.24534.1.S1_at11/112+19053005..19057488expressed protein
LOC_Os02g32290Os.49595.1.S1_at10/112+19061470..19066480expressed protein
LOC_Os02g32300OsAffx.20524.1.S1_at6/112+19067640..19071968retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g32310NANA2+19072431..19072844hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2826.1.S1_at--668--4551Chr02:19048084..19048108 (25 bp)
GCGCCGGTGGTCGAGCTTTCTGATC
LOC_Os02g32270
OsAffx.2826.1.S1_at--458--4491Chr02:19048086..19048110 (25 bp)
GCCGGTGGTCGAGCTTTCTGATCAA
LOC_Os02g32270
OsAffx.2826.1.S1_at--1153--3971Chr02:19048088..19048112 (25 bp)
CGGTGGTCGAGCTTTCTGATCAATC
LOC_Os02g32270
OsAffx.2826.1.S1_at--952--5911Chr02:19048096..19048120 (25 bp)
GAGCTTTCTGATCAATCGACGGCGG
LOC_Os02g32270
OsAffx.2826.1.S1_at--863--1551Chr02:19048097..19048121 (25 bp)
AGCTTTCTGATCAATCGACGGCGGC
LOC_Os02g32270
OsAffx.2826.1.S1_at--480--3671Chr02:19048099..19048123 (25 bp)
CTTTCTGATCAATCGACGGCGGCGG
LOC_Os02g32270
OsAffx.2826.1.S1_at--945--9151Chr02:19048187..19048211 (25 bp)
TGCGCGGCAGCAACCAGCTGGCGAC
LOC_Os02g32270
OsAffx.2826.1.S1_at--522--3411Chr02:19048194..19048218 (25 bp)
CAGCAACCAGCTGGCGACGGGCATG
LOC_Os02g32270
OsAffx.2826.1.S1_at--129--7232Chr08:23750019..23750164 (25 bp)
GTCGACGTCACCGTGTGCGACGACG
NONE
OsAffx.2826.1.S1_at--961--1911Chr02:19048358..19048382 (25 bp)
ACGGGCGCGTGTTCGACAGGGTGTT
LOC_Os02g32270
OsAffx.2826.1.S1_at--804--4651Chr02:19048364..19048388 (25 bp)
GCGTGTTCGACAGGGTGTTCGACGC
LOC_Os02g32270
Target Sequence 
GCGCCGGTGGTCGAGCTTTCTGATCAATCGACGGCGGCGGCGGCGGCGGCGGCGAGCATGGAGATGGAGCAGCTCACAGC
CCGCTTCAACGACGCCGTCGCCGTGCGCGGCAGCAACCAGCTGGCGACGGGCATGGAGATGGCGGCGGCGCCGGGGCGGG
GCGCCGATGACGATATGGAGGAGCTCGTCGCCCGGCTCGTCGACGTCACCGTGTGCGACGACGGGCCGGCGGCGCGGGGC
GAGGCGGCGTGCGCCGTGCGGGTCCGCCTCCCGGACGGGCGCGTGTTCGACAGGGTGTTCGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis