Browse Element(s) Details


OsAffx.28286.1.S1_at

Description tigr:9635.m00468
TID=OsAffx.28286.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0532011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05300OsAffx.28284.1.S1_at11/117+2409271..2410643hypothetical protein
LOC_Os07g05310OsAffx.28285.1.S1_at10/117+2418863..2419798hypothetical protein
LOC_Os07g05320OsAffx.28286.1.S1_at11/117+2426510..2427848expressed protein
LOC_Os07g05330OsAffx.23366.1.S1_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05330OsAffx.23366.2.S1_s_at1/117+2428212..2432983transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05340OsAffx.10048.1.S1_x_at1/117+2440236..2441160retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05350OsAffx.5220.1.S1_at10/117+2446178..2447256hypothetical protein
LOC_Os07g05360Os.28301.1.S1_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed
LOC_Os07g05360Os.28301.1.S2_at11/117+2452264..2454903Photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28286.1.S1_at--273--4711Chr07:2427158..2427182 (25 bp)
GCGGCCAAGACTCGATTTCTGGATC
LOC_Os07g05320
OsAffx.28286.1.S1_at--489--851Chr07:2427254..2427278 (25 bp)
ATGGCTGTCGTTGCTGCCCTGAAAA
LOC_Os07g05320
OsAffx.28286.1.S1_at--1033--3231Chr07:2427286..2427310 (25 bp)
CAAGCTCTTGTTTGGCGATGGTTCT
LOC_Os07g05320
OsAffx.28286.1.S1_at--356--1691Chr07:2427353..2427377 (25 bp)
ACCAACCGATTTGCCGAGGAGCTGC
LOC_Os07g05320
OsAffx.28286.1.S1_at--388--8431Chr07:2427457..2427575 (25 bp)
GGCCTTGGAACAACACAGTGCTTAT
LOC_Os07g05320
OsAffx.28286.1.S1_at--681--6971Chr07:2427584..2427608 (25 bp)
GTACCACCAGAGAGCAGGCGCCAAG
LOC_Os07g05320
OsAffx.28286.1.S1_at--777--951Chr07:2427607..2427631 (25 bp)
AGGACATGGTGCTCCATACACTTTT
LOC_Os07g05320
OsAffx.28286.1.S1_at--435--3571Chr07:2427621..2427645 (25 bp)
CATACACTTTTCTTCGTAGCACAGA
LOC_Os07g05320
OsAffx.28286.1.S1_at--716--8811Chr07:2427649..2427673 (25 bp)
TGTTGATGACTTACTCCAGCTTATC
LOC_Os07g05320
OsAffx.28286.1.S1_at--182--1351Chr07:2427712..2427736 (25 bp)
AGAGTTTGTCCATCCAGGTTCAGCA
LOC_Os07g05320
OsAffx.28286.1.S1_at--758--7891Chr07:2427728..2427752 (25 bp)
GGTTCAGCAGAAGCTCCATTGGGTA
LOC_Os07g05320
Target Sequence 
GCGGCCAAGACTCGATTTCTGGATCGCGCCGGCGCCGCGCTTGCCGGCGAGCGGCTTGTGCGGCTGCTGCTGGGGCCGAC
GACATCCCCGGAGAGGATGGCTGTCGTTGCTGCCCTGAAAAGGGTGCACAAGCTCTTGTTTGGCGATGGTTCTGTGCGGC
TGATGCCTCCTCAGCGTCCCCTCCCGTCCTCCGCCACCAACCGATTTGCCGAGGAGCTGCGCGCCGCGGGAGTGATGGAT
GTCAATGGCAAAGTCAATCAAGGTGAAGCTCTGGGAGCAGCAGTGGGTAAGATTGTGGAGGCCTTGGAACAACACAGTGC
TTATATGATGAAGTACCACCAGAGAGCAGGCGCCAAGGACATGGTGCTCCATACACTTTTCTTCGTAGCACAGATCCTGT
TGATGACTTACTCCAGCTTATCAGAGTTGCTTGAAGACGTTACAGGGCACAAGACATGGGAGAGTTTGTCCATCCAGGTT
CAGCAGAAGCTCCATTGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis