Browse Element(s) Details


OsAffx.28308.1.S1_at

Description tigr:9635.m00593
TID=OsAffx.28308.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0653011/11hypothetical protein
LOC_Os01g681041/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06490Os.54677.1.S1_at11/117+3148558..3150943expressed protein
LOC_Os07g06500Os.18422.1.A1_at11/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06500Os.20860.1.S1_at1/117+3151881..3155409F-box domain containing protein, expressed
LOC_Os07g06510Os.20602.2.S1_x_at11/117+3156193..3158373hAT family dimerisation domain containing protein
LOC_Os07g06530OsAffx.28308.1.S1_at11/117+3167547..3170311hypothetical protein
LOC_Os07g06530Os.5526.1.S1_at7/117+3167547..3170311hypothetical protein
LOC_Os07g06530OsAffx.28308.2.S1_x_at1/117+3167547..3170311hypothetical protein
LOC_Os07g06540OsAffx.22478.1.S1_at11/117+3178646..3179224Zinc finger, C3HC4 type family protein
LOC_Os07g06550Os.21592.1.S1_at10/117+3181642..3185545expressed protein
LOC_Os07g06550Os.12752.3.S1_x_at7/117+3181642..3185545expressed protein
LOC_Os07g06560NANA7+3187136..3187684Zinc finger, C3HC4 type family protein
LOC_Os07g06570OsAffx.16125.1.S1_at11/117+3188614..3190371Protein kinase domain containing protein
LOC_Os07g06580NANA7+3193564..3194568hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0004407molecular_functionhistone deacetylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28308.1.S1_at--671--7731Chr07:3169747..3169771 (25 bp)
GGTGGTACGTGCTCATCAGGCCGTC
LOC_Os07g06530
OsAffx.28308.1.S1_at--95--9611Chr07:3169759..3169783 (25 bp)
TCATCAGGCCGTCACTGGCGGAGTC
LOC_Os07g06530
OsAffx.28308.1.S1_at--246--9851Chr07:3169965..3169989 (25 bp)
TACAAGGCGGCGACACCCACAACGA
LOC_Os07g06530
OsAffx.28308.1.S1_at--219--4151Chr07:3170048..3170072 (25 bp)
CGCGACGGCCGGTCTATCGGACCTG
LOC_Os07g06530
OsAffx.28308.1.S1_at--607--7151Chr07:3170059..3170083 (25 bp)
GTCTATCGGACCTGCTCGACAGGAT
LOC_Os07g06530
OsAffx.28308.1.S1_at--582--9292Chr07:3170131..3170155 (25 bp)
TCCCCGTGGGCAGGAGTCCGACGAT
LOC_Os07g06530
OsAffx.28308.1.S1_at--652--6291Chr07:3170153..3170177 (25 bp)
GATGATCTCGGGTTCTCGCTGTACG
LOC_Os07g06530
OsAffx.28308.1.S1_at--941--7891Chr07:3170163..3170187 (25 bp)
GGTTCTCGCTGTACGATGGTTACTA
LOC_Os07g06530
OsAffx.28308.1.S1_at--505--4731Chr07:3170170..3170194 (25 bp)
GCTGTACGATGGTTACTACCCGCCG
LOC_Os07g06530
OsAffx.28308.1.S1_at--385--9411Chr07:3170244..3170268 (25 bp)
TCGTCGAGGAGAGGTTGCAATCCAT
LOC_Os07g06530
OsAffx.28308.1.S1_at--337--4071Chr07:3170248..3170272 (25 bp)
CGAGGAGAGGTTGCAATCCATCGTC
LOC_Os07g06530
Target Sequence 
GGTGGTACGTGCTCATCAGGCCGTCACTGGCGGAGTCCGGCGTCGCCGAGCGCTCCGTGGAGGTGGGCCGGGTGGAAGCC
ATCGACGACATCGCGCTGGAGCGCGAGTTCCGCCGCCTCGACGACGGGAGCTCCGTCGAGGTGTCCTTCATGCAGCGGCC
GGCGGGGTGCTACCACCACGTCGCGTGCCACGACGGCTTCAAGGTGCTCCGCCTGCCGTACAAGGCGGCGACACCCACAA
CGACCTCAAGCTCCGCGACAGCCTCCCGTCGTTCGCCATGCTCGTCTTCCTCCCCGACGACCGCGACGGCCGGTCTATCG
GACCTGCTCGACAGGATCACCTCCTCGCCGGAGTTCGTCGACGACCACCTCCCGCCGGAGTGCGTCCCCGTGGGCAGGAG
TCCGACGATGATCTCGGGTTCTCGCTGTACGATGGTTACTACCCGCCGCCGCTGAAGCTGGTGGACTTCGTTGCCGACCA
TCTGTTCGCCTTCTTCATCGTCGAGGAGAGGTTGCAATCCATCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis