Browse Element(s) Details


OsAffx.28316.1.S1_at

Description tigr:9635.m00631
TID=OsAffx.28316.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0690011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06860Os.28983.1.S1_at11/117+3349432..3350972PrMC3, putative, expressed
LOC_Os07g06870OsAffx.28315.1.S1_at11/117+3356244..3357843hypothetical protein
LOC_Os07g06880Os.18428.1.S1_at11/117+3358301..3359859PrMC3, putative, expressed
LOC_Os07g06890Os.47952.1.A1_at3/117+3361792..3368287FAD linked oxidases, C-terminal domain containing protein, expressed
LOC_Os07g06900OsAffx.28316.1.S1_at11/117+3370897..3373090F-box domain containing protein
LOC_Os07g06910OsAffx.21754.1.S1_x_at1/117+3376409..3377539retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06920NANA7+3378934..3382385retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g06930OsAffx.22470.1.S1_at11/117+3384720..3385371hypothetical protein
LOC_Os07g06940Os.17841.1.S1_at11/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed
LOC_Os07g06940Os.17841.2.S1_x_at9/117+3393161..3398476Valyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28316.1.S1_at--795--4751Chr07:3371633..3371657 (25 bp)
GCTGACATTCTAGATTTTGCCTGCA
LOC_Os07g06900
OsAffx.28316.1.S1_at--788--911Chr07:3371602..3371626 (25 bp)
AGGCTGCTCCCTTGATGGAAAAGCT
LOC_Os07g06900
OsAffx.28316.1.S1_at--1087--6311Chr07:3371290..3371314 (25 bp)
GATGAATTGTCGTGATCACCTCCGG
LOC_Os07g06900
OsAffx.28316.1.S1_at--660--1251Chr07:3371162..3371186 (25 bp)
AGTTGGCACATCATATTCTCAGGAA
LOC_Os07g06900
OsAffx.28316.1.S1_at--682--10211Chr07:3371149..3371173 (25 bp)
TATTCTCAGGAACTCTGTCGTGCTC
LOC_Os07g06900
OsAffx.28316.1.S1_at--691--8711Chr07:3371134..3371158 (25 bp)
TGTCGTGCTCCAAGCCATGAACATA
LOC_Os07g06900
OsAffx.28316.1.S1_at--992--291Chr07:3371097..3371121 (25 bp)
ATAGCAGCCTGTGATCCTTCGAGAA
LOC_Os07g06900
OsAffx.28316.1.S1_at--548--5291Chr07:3371075..3371099 (25 bp)
GAATGGCAATTCTTGAGGCGTTCAA
LOC_Os07g06900
OsAffx.28316.1.S1_at--989--1371Chr07:3371005..3371029 (25 bp)
AGACCACCGTAACGTCGTTCATGTT
LOC_Os07g06900
OsAffx.28316.1.S1_at--1023--9331Chr07:3370958..3370982 (25 bp)
TCGAAAATGTACCAGCTTACCGGCT
LOC_Os07g06900
OsAffx.28316.1.S1_at--942--9951Chr07:3370941..3370965 (25 bp)
TACCGGCTGGTATCTCCATTTTGGA
LOC_Os07g06900
Target Sequence 
GCTGACATTCTAGATTTTGCCTGCATCTTGGAGGCTGCTCCCTTGATGGAAAAGCTTGAATTTCATATGTGGATGAATTG
TCGTGATCACCTCCGGTATCGCAAAGCTCATGGTAAACTAAGAACTCTTCCTCCATGCCCCCACTACCATCTCAAGGAGG
TCAATATCGCAGGATTTTACGGTCAGAAAGACCAGCTGGAGTTGGCACATCATATTCTCAGGAACTCTGTCGTGCTCCAA
GCCATGAACATAGATCCGAGGCCTATAGCAGCCTGTGATCCTTCGAGAATGGCAATTCTTGAGGCGTTCAACTTTGTGGA
TGGATCTAAAGTTGCCATGAAATATCTCTGCAAGGCAGACCACCGTAACGTCGTTCATGTTTCAGATGTGTCACGTAAGG
ATGTCGAAAATGTACCAGCTTACCGGCTGGTATCTCCATTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis