Browse Element(s) Details


OsAffx.28320.1.S1_at

Description tigr:9635.m00658
TID=OsAffx.28320.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0716011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07120Os.27691.2.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07120Os.27691.1.S1_x_at2/117+3518557..3519737retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g07130Os.31929.11.S1_x_at11/117+3522202..3524008hypothetical protein
LOC_Os07g07140Os.46018.1.S1_x_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07140Os.46018.1.S1_at9/117+3526099..3527973hypothetical protein
LOC_Os07g07150Os.32042.2.S1_x_at11/117+3537843..3540491expressed protein
LOC_Os07g07150Os.32042.1.S1_at9/117+3537843..3540491expressed protein
LOC_Os07g07160OsAffx.28320.1.S1_at11/117+3543079..3544314hypothetical protein
LOC_Os07g07160Os.46018.1.S1_x_at1/117+3543079..3544314hypothetical protein
LOC_Os07g07170OsAffx.16131.1.S1_at10/117+3545801..3546892Plastocyanin-like domain containing protein
LOC_Os07g07180Os.46676.1.A1_x_at1/117+3554293..3556922N-terminal acetyltransferase, putative
LOC_Os07g07194Os.7143.1.S1_at11/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194Os.47367.1.S1_x_at10/117+3559390..3567413MAC/Perforin domain containing protein, expressed
LOC_Os07g07194OsAffx.16132.1.S1_at1/117+3559390..3567413MAC/Perforin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28320.1.S1_at--385--7131Chr07:3543212..3543236 (25 bp)
GTCTTCGTCCTTCTAGTGAGGCGAA
LOC_Os07g07160
OsAffx.28320.1.S1_at--111--5511Chr07:3543234..3543258 (25 bp)
GAACAAAACTATTCGCACCGTCCTA
LOC_Os07g07160
OsAffx.28320.1.S1_at--547--5091Chr07:3543248..3543272 (25 bp)
GCACCGTCCTATTCATCTTCAAGGT
LOC_Os07g07160
OsAffx.28320.1.S1_at--987--2891Chr07:3544097..3544120 (24 bp)
AAGGTCATCTGCTTCGCCTTGATCG
LOC_Os07g07160
OsAffx.28320.1.S1_at--283--4451Chr07:3544111..3544135 (25 bp)
GCCTTGATCGCATTGGCGTCGAGCA
LOC_Os07g07160
OsAffx.28320.1.S1_at--609--4051Chr07:3544130..3544154 (25 bp)
CGAGCACGACGATCTACTCCACGGT
LOC_Os07g07160
OsAffx.28320.1.S1_at--133--1931Chr07:3544150..3544174 (25 bp)
ACGGTGCACCCGAATCCAGGGCAAA
LOC_Os07g07160
OsAffx.28320.1.S1_at--242--5271Chr07:3544161..3544185 (25 bp)
GAATCCAGGGCAAAGCATCGCTGAT
LOC_Os07g07160
OsAffx.28320.1.S1_at--797--2711Chr07:3544173..3544197 (25 bp)
AAGCATCGCTGATCAACGGTTAGAT
LOC_Os07g07160
OsAffx.28320.1.S1_at--681--371Chr07:3544184..3544208 (25 bp)
ATCAACGGTTAGATGTGCAGGTCAT
LOC_Os07g07160
OsAffx.28320.1.S1_at--810--3771Chr07:3544246..3544270 (25 bp)
CTCGTTTCGTACTTCAGCTTGATCA
LOC_Os07g07160
Target Sequence 
GTCTTCGTCCTTCTAGTGAGGCGAACAAAACTATTCGCACCGTCCTATTCATCTTCAAGGTCATCTGCTTCGCCTTGATC
GCATTGGCGTCGAGCACGACGATCTACTCCACGGTGCACCCGAATCCAGGGCAAAGCATCGCTGATCAACGGTTAGATGT
GCAGGTCATGTGTGGCTTCATCCTAGCAGTTGGTGTGCTCTGGCTGCTCGTTTCGTACTTCAGCTTGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28320.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis