Browse Element(s) Details


OsAffx.28394.1.S1_at

Description tigr:9635.m01049
TID=OsAffx.28394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1079011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g10770Os.10176.1.S1_at11/117+5851080..5857018Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os07g10780Os.52422.1.S1_s_at11/117+5863037..5864374Remorin, C-terminal region family protein, expressed
LOC_Os07g10790OsAffx.28394.1.S1_at11/117+5871641..5872185hypothetical protein
LOC_Os07g10800NANA7+5873626..5874132hypothetical protein
LOC_Os07g10810Os.17465.2.A1_at4/117+5875090..5878100hypothetical protein
LOC_Os07g10810OsAffx.29276.1.S1_at1/117+5875090..5878100hypothetical protein
LOC_Os07g10820Os.47857.1.S1_at11/117+5878489..5882657transporter, putative, expressed
LOC_Os07g10830Os.10561.1.S1_at11/117+5883650..5888229Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kD subunit containing protein, expressed
LOC_Os07g10840Os.18257.1.S1_at11/117+5888859..5892428seed imbibition protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28394.1.S1_at--509--4411Chr07:5872114..5872138 (25 bp)
GCCACCTCATCCGTGGGAGCCGAGG
LOC_Os07g10790
OsAffx.28394.1.S1_at--864--6191Chr07:5871874..5872110 (25 bp)
GAGGCAGCCGGTGTGCGACATGTAC
LOC_Os07g10790
OsAffx.28394.1.S1_at--693--9151Chr07:5871861..5871885 (25 bp)
TGCGACATGTACGAGGGACCAGCTG
LOC_Os07g10790
OsAffx.28394.1.S1_at--689--3511Chr07:5871856..5871880 (25 bp)
CATGTACGAGGGACCAGCTGCGCTG
LOC_Os07g10790
OsAffx.28394.1.S1_at--272--4071Chr07:5871806..5871830 (25 bp)
CGAGGAGATGGTCGTGGCCGCTGCT
LOC_Os07g10790
OsAffx.28394.1.S1_at--531--3851Chr07:5871749..5871773 (25 bp)
CTGCACCGACGTGACAGCAGCTGAG
LOC_Os07g10790
OsAffx.28394.1.S1_at--626--4091Chr07:5871743..5871767 (25 bp)
CGACGTGACAGCAGCTGAGAACGGC
LOC_Os07g10790
OsAffx.28394.1.S1_at--1162--3271Chr07:5871684..5871708 (25 bp)
CACAGCTACAGCCATGCAGCACATA
LOC_Os07g10790
OsAffx.28394.1.S1_at--1161--4831Chr07:5871680..5871704 (25 bp)
GCTACAGCCATGCAGCACATACTTT
LOC_Os07g10790
OsAffx.28394.1.S1_at--712--1691Chr07:5871675..5871699 (25 bp)
AGCCATGCAGCACATACTTTGTCCG
LOC_Os07g10790
OsAffx.28394.1.S1_at--560--651Chr07:5871671..5871695 (25 bp)
ATGCAGCACATACTTTGTCCGGCTG
LOC_Os07g10790
Target Sequence 
GCCACCTCATCCGTGGGAGCCGAGGGCCGAGGCAGCCGGTGTGCGACATGTACGAGGGACCAGCTGCGCTGTCGGCCCGT
CGCTCGCCGCCGTCGTCGAGGAGATGGTCGTGGCCGCTGCTGTTGTGGTGAGCTGGCTGGCCTCACGCTGCGCCTGCACC
GACGTGACAGCAGCTGAGAACGGCGCCGGTGTCCTGTCCTCCGCCGCCGCCACGACGCCACAGCTACAGCCATGCAGCAC
ATACTTTGTCCGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis