Browse Element(s) Details


OsAffx.28415.1.S1_at

Description tigr:9635.m01218
TID=OsAffx.28415.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1240011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12380OsAffx.10209.2.A1_at11/117+7045333..7045785hypothetical protein
LOC_Os07g12390Os.30993.1.S1_at10/117+7052031..7052628expressed protein
LOC_Os07g12400OsAffx.28415.1.S1_at11/117+7068820..7069255hypothetical protein
LOC_Os07g12410Os.46012.2.S1_x_at8/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.46012.3.S1_x_at7/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.27088.1.A1_x_at5/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12410Os.54691.1.S1_x_at1/117+7076372..7082059retrotransposon protein, putative, unclassified
LOC_Os07g12420OsAffx.10222.1.S1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.45902.1.A1_x_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.10263.1.S1_at2/117+7082910..7085643hypothetical protein
LOC_Os07g12420Os.46808.2.S1_x_at1/117+7082910..7085643hypothetical protein
LOC_Os07g12430OsAffx.5300.2.S1_at11/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.5300.1.S1_s_at10/117+7090152..7091812hypothetical protein
LOC_Os07g12430Os.27135.1.A1_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12430OsAffx.17065.1.A1_s_at1/117+7090152..7091812hypothetical protein
LOC_Os07g12440OsAffx.28417.1.S1_at11/117+7093829..7094120hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28415.1.S1_at--407--1871Chr07:7069197..7069221 (25 bp)
ACGAGGTTGGTGACGCGGAGCGAGA
LOC_Os07g12400
OsAffx.28415.1.S1_at--11--5811Chr07:7069186..7069210 (25 bp)
GACGCGGAGCGAGAGACGGTGATGA
LOC_Os07g12400
OsAffx.28415.1.S1_at--87--9831Chr07:7068893..7068917 (25 bp)
TAAAATGCAAGGTCATACTCCGCTC
LOC_Os07g12400
OsAffx.28415.1.S1_at--492--2291Chr07:7068891..7068915 (25 bp)
AAATGCAAGGTCATACTCCGCTCTG
LOC_Os07g12400
OsAffx.28415.1.S1_at--1002--651Chr07:7068889..7068913 (25 bp)
ATGCAAGGTCATACTCCGCTCTGGT
LOC_Os07g12400
OsAffx.28415.1.S1_at--1031--5171Chr07:7068887..7068911 (25 bp)
GCAAGGTCATACTCCGCTCTGGTGA
LOC_Os07g12400
OsAffx.28415.1.S1_at--555--3211Chr07:7068886..7068910 (25 bp)
CAAGGTCATACTCCGCTCTGGTGAT
LOC_Os07g12400
OsAffx.28415.1.S1_at--63--7131Chr07:7068882..7068906 (25 bp)
GTCATACTCCGCTCTGGTGATTCAA
LOC_Os07g12400
OsAffx.28415.1.S1_at--751--9591Chr07:7068881..7068905 (25 bp)
TCATACTCCGCTCTGGTGATTCAAG
LOC_Os07g12400
OsAffx.28415.1.S1_at--1027--7751Chr07:7068867..7068891 (25 bp)
GGTGATTCAAGTAGCATTGACTCTG
LOC_Os07g12400
OsAffx.28415.1.S1_at--501--8831Chr07:7068865..7068889 (25 bp)
TGATTCAAGTAGCATTGACTCTGAC
LOC_Os07g12400
Target Sequence 
ACGAGGTTGGTGACGCGGAGCGAGAGACGGTGATGAGGGGAATAAAATGCAAGGTCATACTCCGCTCTGGTGATTCAAGT
AGCATTGACTCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis