Browse Element(s) Details


OsAffx.28463.1.S1_at

Description tigr:9635.m01550
TID=OsAffx.28463.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1557011/11PPR986-12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15510Os.34643.1.S1_at1/117+8996899..8999625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15520NANA7+9000605..9001033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15530Os.10688.1.S1_at2/117+9002297..9002524expressed protein
LOC_Os07g15540Os.29967.1.S1_at11/117+9003509..9006804GAF domain containing protein, expressed
LOC_Os07g15550NANA7+9011871..9013223hypothetical protein
LOC_Os07g15560OsAffx.28462.1.S1_at11/117+9015235..9016752retrotransposon protein, putative, unclassified
LOC_Os07g15570OsAffx.28463.1.S1_at11/117+9020589..9023862PPR986-12, putative, expressed
LOC_Os07g15580OsAffx.1430.2.A1_at11/117+9026189..9027824hypothetical protein
LOC_Os07g15580Os.55234.1.S1_s_at1/117+9026189..9027824hypothetical protein
LOC_Os07g15590OsAffx.22394.2.S1_at10/117+9030075..9032765hypothetical protein
LOC_Os07g15590OsAffx.22394.1.S1_at7/117+9030075..9032765hypothetical protein
LOC_Os07g15600Os.6091.1.A1_at11/117+9034315..9037530f13j11 PRLI-interacting factor G, putative, expressed
LOC_Os07g15610OsAffx.10156.1.S1_x_at11/117+9045841..9046369hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0031425biological_processchloroplast RNA processing
GO:0031426biological_processpolycistronic mRNA processing
GO:0009507cellular_componentchloroplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28463.1.S1_at--196--3591Chr07:9021547..9021571 (25 bp)
CATTTCTTGGAGTTCTTTCTGCGTG
LOC_Os07g15570
OsAffx.28463.1.S1_at--792--6231Chr07:9021594..9021618 (25 bp)
GATGGCTTCAAGTACTTTCTTCTAA
LOC_Os07g15570
OsAffx.28463.1.S1_at--54--2211Chr07:9021631..9021655 (25 bp)
ACAAAATTGATCCAACTCCGCAGCA
LOC_Os07g15570
OsAffx.28463.1.S1_at--100--5071Chr07:9021650..9021674 (25 bp)
GCAGCATCTTGCTTGTCTAGTTGAT
LOC_Os07g15570
OsAffx.28463.1.S1_at--139--10851Chr07:9021717..9021741 (25 bp)
TTGGTCAATATGTCCTGCGACGCAA
LOC_Os07g15570
OsAffx.28463.1.S1_at--387--1491Chr07:9021800..9021824 (25 bp)
AGCAAAGTGGGCTGCCTCTAGGCTA
LOC_Os07g15570
OsAffx.28463.1.S1_at--1109--10151Chr07:9021865..9021889 (25 bp)
TATCTAATACGTATGCTGCTGCAGG
LOC_Os07g15570
OsAffx.28463.1.S1_at--833--5771Chr07:9023634..9023658 (25 bp)
GACCGTTTCAAGTTCAGTTACCTGC
LOC_Os07g15570
OsAffx.28463.1.S1_at--1141--6731Chr07:9023645..9023669 (25 bp)
GTTCAGTTACCTGCTTGTGAGCCAA
LOC_Os07g15570
OsAffx.28463.1.S1_at--1057--4371Chr07:9023666..9023690 (25 bp)
CCAAGAGATCTGTGCGGCTCAATCG
LOC_Os07g15570
OsAffx.28463.1.S1_at--992--8311Chr07:9023681..9023705 (25 bp)
GGCTCAATCGTGGTTGCTTGCGCTG
LOC_Os07g15570
Target Sequence 
CATTTCTTGGAGTTCTTTCTGCGTGCAGTCATGCTGGGCTCATTGAAGATGGCTTCAAGTACTTTCTTCTAATGACGAGG
GACTACAAAATTGATCCAACTCCGCAGCATCTTGCTTGTCTAGTTGATCTCTTAGGGAGAGCTGGTAGGATTAGAGATGC
CTACGAATTTTTGGTCAATATGTCCTGCGACGCAAATGTTGATGTCATTGGAGCTTTCCTTGGTGCTTGCAGAATGCGAG
GAAACATTGAGTCAGCAAAGTGGGCTGCCTCTAGGCTATTTAGTCTAAAGCCAGATGATCCAATCAATTACCTGCTTATA
TCTAATACGTATGCTGCTGCAGGAGATTGGAATGAGCTTGCAAAGNNNNNCANNNNNNNNANNNNNNNGANANNNTNNNC
NNNGNNNNNNNNNNNNTNTNNNGTTTCTTCTAGCATTTATTGGTTAATGGTGGCCAAGCAGAATAAGGCACTTGACCGTT
TCAAGTTCAGTTACCTGCTTGTGAGCCAAGAGATCTGTGCGGCTCAATCGTGGTTGCTTGCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis