Browse Element(s) Details


OsAffx.28468.1.S1_at

Description tigr:9635.m01581
TID=OsAffx.28468.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g158602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15830OsAffx.31892.3.S1_at10/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.31892.1.S1_x_at4/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15830OsAffx.4864.1.S1_at1/117+9192473..9194816retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g15840OsAffx.8326.1.S1_x_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15840OsAffx.19950.1.S1_at1/117+9200654..9203217hypothetical protein
LOC_Os07g15850OsAffx.4856.1.S1_x_at1/117+9204802..9210438retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g15860OsAffx.28468.1.S1_at2/117+9213420..9214479hypothetical protein
LOC_Os07g15870OsAffx.16286.1.S1_at11/117+9216446..9217637hypothetical protein
LOC_Os07g15880Os.9227.1.S1_a_at11/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15880OsAffx.3846.1.S1_at1/117+9219706..9225512Mitochondrial prohibitin complex protein 2, putative, expressed
LOC_Os07g15890Os.41248.4.S1_x_at1/117+9228610..9233991retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28468.1.S1_at--244--6171Chr07:9213044..9213068 (25 bp)
GAGGACGAACTTTGGGCTGACCCGT
NONE
OsAffx.28468.1.S1_at--860--8611Chr07:9213056..9213080 (25 bp)
TGGGCTGACCCGTATTACCACGCAT
NONE
OsAffx.28468.1.S1_at--442--3331Chr07:9213101..9213125 (25 bp)
CACTGCTGTGCAAGGACTGACTGTC
NONE
OsAffx.28468.1.S1_at--430--1971Chr07:9213116..9213140 (25 bp)
ACTGACTGTCCGTGTAGCAGCTTTG
NONE
OsAffx.28468.1.S1_at--374--6091Chr07:9213310..9213334 (25 bp)
GAGTCAAGTAGCAGCGGTGCCATGA
NONE
OsAffx.28468.1.S1_at--113--711Chr07:9213331..9213355 (25 bp)
ATGAGTTTGGATGCCGGCTGCGACA
NONE
OsAffx.28468.1.S1_at--497--4531Chr07:9213387..9213411 (25 bp)
GCCGCCATGGTCTAGACAGGCTCAT
NONE
OsAffx.28468.1.S1_at--757--391Chr07:9213410..9213434 (25 bp)
ATCACCAGGGATGCCGCTCAAATGT
NONE
OsAffx.28468.1.S1_at--9--611Chr07:9213420..9213444 (25 bp)
ATGCCGCTCAAATGTGGCCATGGCT
NONE
OsAffx.28468.1.S1_at--71--871Chr07:9213439..9213463 (25 bp)
ATGGCTCCCTCATGTGCAGTGGCGT
LOC_Os07g15860
OsAffx.28468.1.S1_at--929--2191Chr07:9213487..9213511 (25 bp)
ACAAAGAAAGCTTCGGCGCCGGATT
LOC_Os07g15860
Target Sequence 
GAGGACGAACTTTGGGCTGACCCGTATTACCACGCATCAACCCTAGCCTCCCGTCGCCACTGCTGTGCAAGGACTGACTG
TCCGTGTAGCAGCTTTGCCCCGGCTTGGGTTGGATCGGCAACGAGAGGAAGCCGAGATGTGGAGGCAACGGCACTGGAGG
GATGGGGCCTCGGGATGGAGTCAAGTAGCAGCGGTGCCATGAGTTTGGATGCCGGCTGCGACACTGCTAGCTTGTCGAAG
AGCATGGAGAGGCCGCCGCCATGGTCTAGACAGGCTCATCACCAGGGATGCCGCTCAAATGTGGCCATGGCTCCCTCATG
TGCAGTGGCGTTGACGGCGACGGGGTCGTGCAGCACAAAGAAAGCTTCGGCGCCGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis