Browse Element(s) Details


OsAffx.28491.1.S1_at

Description tigr:9635.m01751
TID=OsAffx.28491.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1741011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17370OsAffx.28490.1.S1_at11/117+10256009..10256467hypothetical protein
LOC_Os07g17380OsAffx.24740.3.A1_at11/117+10258929..10259447hypothetical protein
LOC_Os07g17390Os.52297.1.S1_at2/117+10260419..10264183Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os07g17400Os.16548.1.S1_at11/117+10272534..10276201RNA-binding protein, putative, expressed
LOC_Os07g17410OsAffx.28491.1.S1_at11/117+10281144..10281506hypothetical protein
LOC_Os07g17420OsAffx.16310.1.S1_at11/117+10282446..10285193hypothetical protein
LOC_Os07g17430OsAffx.28492.1.S1_at10/117+10288573..10289455hypothetical protein
LOC_Os07g17440NANA7+10291762..10295460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17450OsAffx.5352.1.S1_at9/117+10297275..10298312hypothetical protein
LOC_Os07g17460Os.52900.1.S1_at10/117+10304067..10306677F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28491.1.S1_at--32--4371Chr07:10281197..10281221 (25 bp)
CCACGACTGCAAGAGCAGCTCGGAT
LOC_Os07g17410
OsAffx.28491.1.S1_at--175--1491Chr07:10281210..10281234 (25 bp)
AGCAGCTCGGATCTGCCCGTTTTTG
LOC_Os07g17410
OsAffx.28491.1.S1_at--282--6371Chr07:10281219..10281243 (25 bp)
GATCTGCCCGTTTTTGGCCGTGGTA
LOC_Os07g17410
OsAffx.28491.1.S1_at--33--3831Chr07:10281222..10281246 (25 bp)
CTGCCCGTTTTTGGCCGTGGTAGAG
LOC_Os07g17410
OsAffx.28491.1.S1_at--435--10471Chr07:10281232..10281256 (25 bp)
TTGGCCGTGGTAGAGTAAGACCCGA
LOC_Os07g17410
OsAffx.28491.1.S1_at--32--7451Chr07:10281238..10281262 (25 bp)
GTGGTAGAGTAAGACCCGACCGCTC
LOC_Os07g17410
OsAffx.28491.1.S1_at--345--7851Chr07:10281240..10281264 (25 bp)
GGTAGAGTAAGACCCGACCGCTCTG
LOC_Os07g17410
OsAffx.28491.1.S1_at--821--5811Chr07:10281255..10281279 (25 bp)
GACCGCTCTGACCTCGGAAGGTGTC
LOC_Os07g17410
OsAffx.28491.1.S1_at--1145--4791Chr07:10281259..10281283 (25 bp)
GCTCTGACCTCGGAAGGTGTCGGAT
LOC_Os07g17410
OsAffx.28491.1.S1_at--761--1751Chr07:10281265..10281287 (23 bp)
ACCTCGGAAGGTGTCGGATCAGGAC
LOC_Os07g17410
OsAffx.28491.1.S1_at--729--1051Chr07:10281273..10281450 (25 bp)
AGGTGTCGGATCAGGACGGCACAGA
LOC_Os07g17410
Target Sequence 
CCACGACTGCAAGAGCAGCTCGGATCTGCCCGTTTTTGGCCGTGGTAGAGTAAGACCCGACCGCTCTGACCTCGGAAGGT
GTCGGATCAGGACGGCACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis