Browse Element(s) Details


OsAffx.28523.1.S1_at

Description tigr:9635.m01988
TID=OsAffx.28523.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2018011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20120OsAffx.16340.1.S1_at11/117+11621339..11621578hypothetical protein
LOC_Os07g20130Os.53221.1.S1_at11/117+11625713..11626690MATH domain containing protein, expressed
LOC_Os07g20140OsAffx.16341.1.S1_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20140OsAffx.16341.1.S1_x_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20150OsAffx.16342.1.S1_at11/117+11630345..11634963expressed protein
LOC_Os07g20150Os.6134.1.S1_at7/117+11630345..11634963expressed protein
LOC_Os07g20160NANA7+11635585..11636241hypothetical protein
LOC_Os07g20170Os.46559.1.S1_at2/117+11641581..11644132Cofilin/tropomyosin-type actin-binding protein, expressed
LOC_Os07g20180OsAffx.28523.1.S1_at11/117+11645726..11646654hypothetical protein
LOC_Os07g20190NANA7+11652071..11653820retrotransposon, putative, centromere-specific
LOC_Os07g20200Os.31312.5.S1_x_at1/117+11655678..11658978retrotransposon protein, putative, unclassified
LOC_Os07g20210NANA7+11659606..11663784retrotransposon protein, putative, unclassified
LOC_Os07g20220NANA7+11664689..11665069hypothetical protein
LOC_Os07g20230NANA7+11667662..11668678retrotransposon protein, putative, unclassified
LOC_Os07g20240Os.38395.3.S1_x_at11/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.2.S1_x_at9/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.4.S1_x_at2/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g20240Os.38395.1.S1_at1/117+11669152..11672040transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28523.1.S1_at--4--1371Chr07:11646521..11646541 (21 bp)
AGAGCAGATGAATTTCGCGCCAAGG
LOC_Os07g20180
OsAffx.28523.1.S1_at--806--5031Chr07:11646521..11646544 (24 bp)
GCAGATGAATTTCGCGCCAAGGAAG
LOC_Os07g20180
OsAffx.28523.1.S1_at--404--6311Chr07:11646547..11646571 (25 bp)
GATGAGCATCAAATCGATGGAGCAC
LOC_Os07g20180
OsAffx.28523.1.S1_at--922--371Chr07:11646554..11646578 (25 bp)
ATCAAATCGATGGAGCACGAGTCCT
LOC_Os07g20180
OsAffx.28523.1.S1_at--613--2271Chr07:11646557..11646581 (25 bp)
AAATCGATGGAGCACGAGTCCTTGA
LOC_Os07g20180
OsAffx.28523.1.S1_at--609--511Chr07:11646559..11646583 (25 bp)
ATCGATGGAGCACGAGTCCTTGAGA
LOC_Os07g20180
OsAffx.28523.1.S1_at--1015--831Chr07:11646563..11646587 (25 bp)
ATGGAGCACGAGTCCTTGAGAACAC
LOC_Os07g20180
OsAffx.28523.1.S1_at--149--5951Chr07:11646566..11646590 (25 bp)
GAGCACGAGTCCTTGAGAACACGGA
LOC_Os07g20180
OsAffx.28523.1.S1_at--196--1452Chr07:11646590..11646614 (25 bp)
AGAAGACGTTGGAGGGCCATCATAT
LOC_Os07g20180
OsAffx.28523.1.S1_at--140--1891Chr07:11646595..11646619 (25 bp)
ACGTTGGAGGGCCATCATATGGCTA
LOC_Os07g20180
OsAffx.28523.1.S1_at--368--8031Chr07:11646600..11646624 (25 bp)
GGAGGGCCATCATATGGCTAAGCAT
LOC_Os07g20180
Target Sequence 
AGAGCAGATGAATTTCGCGCCAAGGAAGTTGATGAGCATCAAATCGATGGAGCACGAGTCCTTGAGAACACGGAGAAGAC
GTTGGAGGGCCATCATATGGCTAAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis