Browse Element(s) Details


OsAffx.28540.1.S1_at

Description tigr:9635.m02111
TID=OsAffx.28540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2236011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22330OsAffx.1196.1.S1_at2/117+12526658..12528047hypothetical protein
LOC_Os07g22330OsAffx.1196.1.S1_x_at1/117+12526658..12528047hypothetical protein
LOC_Os07g22340NANA7+12539465..12539676hypothetical protein
LOC_Os07g22350Os.6847.1.S1_at11/117+12542517..12548363Glucose-6-phosphate 1-dehydrogenase 2, chloroplast precursor, putative, expressed
LOC_Os07g22360OsAffx.28540.1.S1_at11/117+12550236..12550802hypothetical protein
LOC_Os07g22370OsAffx.5401.1.S1_at11/117+12553697..12554201hypothetical protein
LOC_Os07g22380OsAffx.28520.1.S1_at1/117+12555970..12561739retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22390Os.17052.2.S1_at2/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22390Os.52391.1.S1_x_at1/117+12564726..12568005shoot gravitropism 2, putative, expressed
LOC_Os07g22400Os.11383.1.S1_a_at11/117+12572886..12577971DNA primase large subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28540.1.S1_at--307--4651Chr07:12550402..12550426 (25 bp)
GCGGGCTAGACCTAACGCCGGAGAA
LOC_Os07g22360
OsAffx.28540.1.S1_at--165--711Chr07:12550426..12550450 (25 bp)
ATGAGGTTAGTTGCCACAGATTCAG
LOC_Os07g22360
OsAffx.28540.1.S1_at--1056--2131Chr07:12550441..12550465 (25 bp)
ACAGATTCAGGCCTCCATGCTATCG
LOC_Os07g22360
OsAffx.28540.1.S1_at--1069--531Chr07:12550462..12550486 (25 bp)
ATCGCCGCCTAGGACTGTGTGTAGA
LOC_Os07g22360
OsAffx.28540.1.S1_at--744--4591Chr07:12550509..12550533 (25 bp)
GCGACTCCCGTGGAGCCAAAGGGAA
LOC_Os07g22360
OsAffx.28540.1.S1_at--47--4691Chr07:12550634..12550658 (25 bp)
GCGGCTTTCGAGTCCTACAATGACG
LOC_Os07g22360
OsAffx.28540.1.S1_at--718--9831Chr07:12550649..12550673 (25 bp)
TACAATGACGACTCGGTGTCCAACG
LOC_Os07g22360
OsAffx.28540.1.S1_at--889--5711Chr07:12550658..12550682 (25 bp)
GACTCGGTGTCCAACGACATCGAAA
LOC_Os07g22360
OsAffx.28540.1.S1_at--80--6131Chr07:12550685..12550709 (25 bp)
GAGTGTGGCCAACGACATTGATGAC
LOC_Os07g22360
OsAffx.28540.1.S1_at--823--2211Chr07:12550708..12550732 (25 bp)
ACAAGGAGGGACACCCTCACACGGG
LOC_Os07g22360
OsAffx.28540.1.S1_at--302--9191Chr07:12550734..12550758 (25 bp)
TGCCTAGTGGCTAGTTGCCTTGCAA
LOC_Os07g22360
Target Sequence 
GCGGGCTAGACCTAACGCCGGAGAATGAGGTTAGTTGCCACAGATTCAGGCCTCCATGCTATCGCCGCCTAGGACTGTGT
GTAGAGAAGCCTGGTAGGGCGACGACGGCGACTCCCGTGGAGCCAAAGGGAAGGATGCAGATGGATCTGGCGCCTCTCTG
CCAGATCCGGCCGAAGAGCGGCCACGCGGGTCGGTGGGGCAGCGCGAAGATGGTGTGGTGGCTTGGTGGGGCGCGGCTTT
CGAGTCCTACAATGACGACTCGGTGTCCAACGACATCGAAAATGAGTGTGGCCAACGACATTGATGACAAGGAGGGACAC
CCTCACACGGGGTGCCTAGTGGCTAGTTGCCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis