Browse Element(s) Details


OsAffx.28551.1.S1_at

Description gb:NM_188172.1
DB_XREF= gi:34903427
TID=OsAffx.28551.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OSJNBa0077F02.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2326011/11hypothetical protein
LOC_Os10g232041/11Protein CutA, chloroplast precursor, putative, expressed
LOC_Os03g484401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23210Os.53746.1.S1_x_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23210Os.52686.1.S1_at11/117+13079777..13082896AC9 transposase, putative, expressed
LOC_Os07g23220NANA7+13086472..13091264retrotransposon protein, putative, unclassified
LOC_Os07g23230NANA7+13092773..13094141hypothetical protein
LOC_Os07g23244Os.24393.1.S1_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.28550.1.S1_x_at11/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23244OsAffx.5458.1.S1_at1/117+13096953..13102081ribosomal protein L23 containing protein, expressed
LOC_Os07g23260OsAffx.28551.1.S1_at11/117+13103030..13104247hypothetical protein
LOC_Os07g23270Os.43636.1.S1_at10/117+13113625..13118366transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23280OsAffx.1309.1.S1_at11/117+13120759..13121409transposon protein, putative, unclassified
LOC_Os07g23290OsAffx.8372.1.S1_at4/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23290OsAffx.8371.1.S1_at3/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009507cellular_componentchloroplast
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28551.1.S1_at--728--4491Chr07:13103559..13103583 (25 bp)
GCCGTGGTTATTGGCGTTCTCAACG
LOC_Os07g23260
OsAffx.28551.1.S1_at--938--6171Chr07:13103528..13103552 (25 bp)
GAGGAGACGACTGCGAGTTCCACTT
LOC_Os07g23260
OsAffx.28551.1.S1_at--1081--191Chr07:13103468..13103492 (25 bp)
ATTTCCGGGCGATGCGATCATGCGA
LOC_Os07g23260
OsAffx.28551.1.S1_at--939--591Chr07:13103449..13103473 (25 bp)
ATGCGAATCGGTTTCCACAGTGGGA
LOC_Os07g23260
OsAffx.28551.1.S1_at--682--4631Chr07:13103230..13103254 (25 bp)
GCGATTCGATCGCAGTTGGCTGCAT
LOC_Os07g23260
OsAffx.28551.1.S1_at--239--1011Chr07:13103175..13103199 (25 bp)
AGGATAGGGTTTCTGTCTTCTTCCA
LOC_Os07g23260
OsAffx.28551.1.S1_at--762--4711Chr07:13103141..13103165 (25 bp)
GCTGGTCTGGTCTGGTTGGTTTCCA
LOC_Os07g23260
OsAffx.28551.1.S1_at--267--10855Chr10:11779721..11779743 (23 bp)
TTGGTTTCCACGTTGGCCCATGAAT
LOC_Os10g23204
OsAffx.28551.1.S1_at--410--9011Chr07:13103106..13103130 (25 bp)
TGAATCATAGATGGTTCTTCCTCAT
LOC_Os07g23260
OsAffx.28551.1.S1_at--957--10552Chr04:6366477..6366499 (23 bp)
TTCTTCCTCATGTTTTGGGCCATGA
NONE
OsAffx.28551.1.S1_at--1145--651Chr07:13103064..13103088 (25 bp)
ATGCAAGTAAACTGCTGCTTCTCCC
LOC_Os07g23260
Target Sequence 
GCCGTGGTTATTGGCGTTCTCAACGGAGGCAGAGGAGACGACTGCGAGTTCCACTTCCATGGCGGCGTAGCACGGTACGG
GCATCCGTGCGATTTCCGGGCGATGCGATCATGCGAATCGGTTTCCACAGTGGGAGGCGCAAATTCCGGCGACGGTTGGA
GCAGAGCCATGGGAAGCGGAGCGGCTTCTTCGGGCGCCAGGTTTGGCACGATCTGCTGGCGAACCGTGCCCTTCGCGCGG
ATGGCCCCGCTCGTGCACTCGATTGGCTCCCGCGGAGGCGTGGGGACGGCGCAGATCGCTCCGAGTCCGAGCGCTGGCTC
GAGAAGCTCGCGATTCGATCGCAGTTGGCTGCATCGCTGCTGTCGGCGTGGCCACGTGAAGAAAAGGATAGGGTTTCTGT
CTTCTTCCAGTTGGGCTGGCTGGTCTGGTCTGGTTGGTTTCCACGTTGGCCCATGAATCATAGATGGTTCTTCCTCATGT
TTTGGGCCATGAACCATGCAAGTAAACTGCTGCTTCTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis