Browse Element(s) Details


OsAffx.28559.1.S1_at

Description tigr:9635.m02266
TID=OsAffx.28559.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2378011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23750Os.27313.1.A1_at11/117+13403550..13410326Sterol 3-beta-glucosyltransferase, putative, expressed
LOC_Os07g23760NANA7+13418259..13419015hypothetical protein
LOC_Os07g23770OsAffx.5417.1.S1_at10/117+13424155..13425342hypothetical protein
LOC_Os07g23780OsAffx.28559.1.S1_at11/117+13431609..13431995hypothetical protein
LOC_Os07g23790Os.11647.2.S1_a_at11/117+13435053..13438500expressed protein
LOC_Os07g23800OsAffx.16385.1.S1_at10/117+13439437..13440756Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os07g23810OsAffx.16386.1.S1_at10/117+13441784..13444008hypothetical protein
LOC_Os07g23810OsAffx.16386.1.S1_x_at9/117+13441784..13444008hypothetical protein
LOC_Os07g23810Os.35837.2.S1_x_at8/117+13441784..13444008hypothetical protein
LOC_Os07g23820NANA7+13451734..13454998retrotransposon protein, putative, unclassified
LOC_Os07g23830NANA7+13455625..13458993retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28559.1.S1_at--827--4191Chr07:13431893..13431917 (25 bp)
CCCTGGAGGAGTTGGGTGTCGCCGA
LOC_Os07g23780
OsAffx.28559.1.S1_at--365--5831Chr07:13431845..13431869 (25 bp)
GACCGTCCCCATCTTCTTGATGACG
LOC_Os07g23780
OsAffx.28559.1.S1_at--732--3551Chr07:13431836..13431860 (25 bp)
CATCTTCTTGATGACGGCCAATGGG
LOC_Os07g23780
OsAffx.28559.1.S1_at--381--8071Chr07:13431767..13431791 (25 bp)
GGAGCATGGCGGTCTCCCGGCCACT
LOC_Os07g23780
OsAffx.28559.1.S1_at--317--4151Chr07:13431734..13431758 (25 bp)
CGCGAGCTCACCGTGGTCGAATGCG
LOC_Os07g23780
OsAffx.28559.1.S1_at--1157--1771Chr07:13431725..13431749 (25 bp)
ACCGTGGTCGAATGCGGCCTCGAGC
LOC_Os07g23780
OsAffx.28559.1.S1_at--711--9731Chr07:13431700..13431724 (25 bp)
TCAAGGTCGTCATTGAGCTCCCGAT
LOC_Os07g23780
OsAffx.28559.1.S1_at--1086--9391Chr07:13431694..13431718 (25 bp)
TCGTCATTGAGCTCCCGATTCATGG
LOC_Os07g23780
OsAffx.28559.1.S1_at--799--1591Chr07:13431685..13431709 (25 bp)
AGCTCCCGATTCATGGGCTCGGTGA
LOC_Os07g23780
OsAffx.28559.1.S1_at--198--4051Chr07:13431679..13431703 (25 bp)
CGATTCATGGGCTCGGTGACGCCGC
LOC_Os07g23780
OsAffx.28559.1.S1_at--750--9252Chr11:16150352..16150406 (25 bp)
TCCTCTTTGCTGACAGCTGCTCTTT
NONE
Target Sequence 
CCCTGGAGGAGTTGGGTGTCGCCGATGACGGCGTCATCGAGCTCGACCGACCGTCCCCATCTTCTTGATGACGGCCAATG
GGGAGGAGGGACGGCGTCGCGGGCGCGGCCGGCGGTCGGCAGGGAAGGAGCATGGCGGTCTCCCGGCCACTCCTACCCCC
GCGAGCTCACCGTGGTCGAATGCGGCCTCGAGCTCAAGGTCGTCATTGAGCTCCCGATTCATGGGCTCGGTGACGCCGCC
ATCGATGCCCACCTCCTCTTTGCTGACAGCTGCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis