Browse Element(s) Details


OsAffx.28577.1.S1_at

Description tigr:9635.m02432
TID=OsAffx.28577.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2538011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25340OsAffx.22385.1.S1_x_at4/117+14473512..14478899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25340OsAffx.20329.1.S1_at1/117+14473512..14478899retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g25349NANA7+14479093..14480173NA
LOC_Os07g25360Os.49815.1.S1_at11/117+14493563..14497509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g25360Os.53842.1.S1_x_at1/117+14493563..14497509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g25370OsAffx.28576.4.S1_at11/117+14500360..14500938Myb-like DNA-binding domain containing protein
LOC_Os07g25380OsAffx.28577.1.S1_at11/117+14501285..14501695hypothetical protein
LOC_Os07g25390OsAffx.12926.1.S1_at2/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25390Os.15946.1.S1_at1/117+14504238..14510791SNF2 domain-containing protein, putative, expressed
LOC_Os07g25400OsAffx.16403.1.S1_at11/117+14515170..14515409hypothetical protein
LOC_Os07g25410Os.20070.1.S1_x_at10/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410Os.52673.1.S1_at4/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25410OsAffx.3017.1.S1_x_at1/117+14518637..14523181metallopeptidase M24 family protein, putative, expressed
LOC_Os07g25420Os.12424.1.S1_at11/117+14525756..1452882826S proteasome non-ATPase regulatory subunit Nin1/mts3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28577.1.S1_at--336--4211Chr07:14501547..14501571 (25 bp)
CCCCTCCACTATGGATTCGTTGTTG
LOC_Os07g25380
OsAffx.28577.1.S1_at--264--111Chr07:14501533..14501557 (25 bp)
ATTCGTTGTTGTAATCCACTCCTCT
LOC_Os07g25380
OsAffx.28577.1.S1_at--194--591Chr07:14501520..14501544 (25 bp)
ATCCACTCCTCTTCTGCGTGATTCA
LOC_Os07g25380
OsAffx.28577.1.S1_at--47--4671Chr07:14501505..14501529 (25 bp)
GCGTGATTCACCTATTCTTCACATT
LOC_Os07g25380
OsAffx.28577.1.S1_at--460--91Chr07:14501483..14501507 (25 bp)
ATTCCCTGACGCCATGTCAAAATGG
LOC_Os07g25380
OsAffx.28577.1.S1_at--14--4011Chr07:14501412..14501436 (25 bp)
CGTGCTCTAAGCTCTATGTGTGTGT
LOC_Os07g25380
OsAffx.28577.1.S1_at--636--791Chr07:14501397..14501421 (25 bp)
ATGTGTGTGTACAGCTAGCAATGGC
LOC_Os07g25380
OsAffx.28577.1.S1_at--975--10011Chr07:14501382..14501406 (25 bp)
TAGCAATGGCTTTGATGCGGGCGAA
LOC_Os07g25380
OsAffx.28577.1.S1_at--235--6351Chr07:14501369..14501393 (25 bp)
GATGCGGGCGAAGAGTTATACTGAA
LOC_Os07g25380
OsAffx.28577.1.S1_at--598--6791Chr07:14501355..14501379 (25 bp)
GTTATACTGAAACATGCCCATGCGA
LOC_Os07g25380
OsAffx.28577.1.S1_at--326--591Chr07:14501342..14501366 (25 bp)
ATGCCCATGCGACAAAAGCCCAAAA
LOC_Os07g25380
Target Sequence 
CCCCTCCACTATGGATTCGTTGTTGTAATCCACTCCTCTTCTGCGTGATTCACCTATTCTTCACATTCCCTGACGCCATG
TCAAAATGGATTGGGGCGTGCTCTAAGCTCTATGTGTGTGTACAGCTAGCAATGGCTTTGATGCGGGCGAAGAGTTATAC
TGAAACATGCCCATGCGACAAAAGCCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28577.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis