Browse Element(s) Details


OsAffx.28598.1.S1_x_at

Description gb:NM_187031.1
DB_XREF= gi:34901147
GEN=P0030H06.2
TID=OsAffx.28598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to disease resistance protein (P0030H06.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2643011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26390NANA7+15162714..15167237retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26400NANA7+15167486..15169442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410OsAffx.20631.1.S1_x_at7/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.33601.3.S1_x_at3/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.32823.1.S1_x_at1/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.49936.2.A1_at1/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26420OsAffx.28597.1.S1_at11/117+15182886..15185609hypothetical protein
LOC_Os07g26420Os.51832.1.S1_at1/117+15182886..15185609hypothetical protein
LOC_Os07g26430OsAffx.28598.1.S1_x_at11/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26430OsAffx.28598.2.S1_x_at10/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26440Os.8688.2.S1_at11/117+15202398..15209777expressed protein
LOC_Os07g26440Os.8688.1.S1_a_at11/117+15202398..15209777expressed protein
LOC_Os07g26440OsAffx.988.1.S1_at1/117+15202398..15209777expressed protein
LOC_Os07g26450NANA7+15212928..15213269hypothetical protein
LOC_Os07g26460OsAffx.5450.1.S1_at11/117+15219787..15221316ABL064Wp, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28598.1.S1_x_at--205--2391Chr07:15197348..15197372 (25 bp)
AAACTAGTTCTTTCTGGCTGCTGGT
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--904--4771Chr07:15197364..15197388 (25 bp)
GCTGCTGGTTTTTACATGTTCCCAA
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--191--1431Chr07:15197398..15197422 (25 bp)
AGAACTCCGTGAACTTTACAGCTTG
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--370--10491Chr07:15197413..15197437 (25 bp)
TTACAGCTTGGTACTCTCAGTTGAG
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--521--2391Chr07:15197524..15197548 (25 bp)
AAACTCCATCACCATTACTGACAAG
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--558--91Chr07:15197551..15197575 (25 bp)
ATTCCCCGCTCTGAAGCATTTTGAA
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--122--10031Chr07:15197584..15197608 (25 bp)
TAGAGCACCATGTCTGATCTTCCAG
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--382--3611Chr07:15197686..15197710 (25 bp)
CATTGGCATTGAGCGCTTGACTGAA
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--502--1151Chr07:15197766..15197790 (25 bp)
AGTCTCGTATCCTCGCAGAAGTTTA
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--658--2051Chr07:15197796..15197820 (25 bp)
ACTTCGAACAATTCCATGCTCATGG
LOC_Os07g26430
OsAffx.28598.1.S1_x_at--786--6031Chr07:15197849..15197873 (25 bp)
GATGTGGACCACTCTTACTTTAATG
LOC_Os07g26430
Target Sequence 
AAACTAGTTCTTTCTGGCTGCTGGTTTTTACATGTTCCCAAGTGGATTAAAGAACTCCGTGAACTTTACAGCTTGGTACT
CTCAGTTGAGGACTTGGACATGAGTGATGTCCGTGCACTAGGAGGAATGCCCACCCTAGTCCACCTTTTTCTGGAAACCC
GAAGGGGTCCTATGGAAAACTCCATCACCATTACTGACAAGTCATTCCCCGCTCTGAAGCATTTTGAATTCAGTTGTAGA
GCACCATGTCTGATCTTCCAGGCTGGTGCAATGCCCCAGGTTGAAAGGCTTAGTTTAAATTTTGCTGCTGACGGATGGAA
TAAATGCAATTCTGAAGCCATTGGCATTGAGCGCTTGACTGAATTGAAAGAAATCTGTGTACAAGTTTTGGGAAGTGGTG
CCAACAGATTAAATACAGAGTCTCGTATCCTCGCAGAAGTTTATTACTACTTCGAACAATTCCATGCTCATGGTAAAAAT
GTGCGTTACTCTTACAATAATGATGTGGACCACTCTTACTTTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28598.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis