Browse Element(s) Details


OsAffx.28598.2.S1_x_at

Description gb:NM_187030.1
DB_XREF= gi:34901145
GEN=P0030H06.1
TID=OsAffx.28598.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) similar to disease resistance protein (P0030H06.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2643010/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26390NANA7+15162714..15167237retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26400NANA7+15167486..15169442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410OsAffx.20631.1.S1_x_at7/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.33601.3.S1_x_at3/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.32823.1.S1_x_at1/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.49936.2.A1_at1/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26420OsAffx.28597.1.S1_at11/117+15182886..15185609hypothetical protein
LOC_Os07g26420Os.51832.1.S1_at1/117+15182886..15185609hypothetical protein
LOC_Os07g26430OsAffx.28598.1.S1_x_at11/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26430OsAffx.28598.2.S1_x_at10/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26440Os.8688.2.S1_at11/117+15202398..15209777expressed protein
LOC_Os07g26440Os.8688.1.S1_a_at11/117+15202398..15209777expressed protein
LOC_Os07g26440OsAffx.988.1.S1_at1/117+15202398..15209777expressed protein
LOC_Os07g26450NANA7+15212928..15213269hypothetical protein
LOC_Os07g26460OsAffx.5450.1.S1_at11/117+15219787..15221316ABL064Wp, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28598.2.S1_x_at--987--10611Chr07:15191839..15191863 (25 bp)
TTCGGACAGTCCCTTCAAGCAAGAT
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--821--10291Chr07:15191883..15191907 (25 bp)
TTTCCAGCTCTCAAGTACCTCAAGT
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--836--2291Chr07:15191962..15191986 (25 bp)
AAAGGCTCAAGCTAGGTTTCAATGC
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--424--7871Chr07:15192021..15192045 (25 bp)
GGTATTGAGTTCCTTTTGAGCCTAA
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--165--3171Chr07:15192062..15192086 (25 bp)
AATTGGCGTCTTTGGTGCTAGTAAA
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--1068--4751Chr07:15192099..15192123 (25 bp)
GCTGCAGAGCGCGTGTTGATCAATG
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--986--1171Chr07:15192131..15192155 (25 bp)
AGTACATCCAGGTTGTCCTAGCATC
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--750--2931Chr07:15192219..15192243 (25 bp)
AAGGCATACATGTCTCTACAGGAAA
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--444--2771NONE
AAGAGTTGTCAGAGGCTTCTCCCTT
NONE
OsAffx.28598.2.S1_x_at--1158--9491Chr07:15192518..15192542 (25 bp)
TCTCCCTTGTGCATTCTGGCAGGAA
LOC_Os07g26430
OsAffx.28598.2.S1_x_at--361--8431Chr07:15192534..15192558 (25 bp)
TGGCAGGAACTTCTTTTTCACGTTT
LOC_Os07g26430
Target Sequence 
TTCGGACAGTCCCTTCAAGCAAGATTATCTTTCATAAAACGGCATTTCCAGCTCTCAAGTACCTCAAGTTCAAGTGTAGA
CTACTTTGCTTAAGCTTTGAGGAAGGAGCAATGCCCAATCTGAAAAGGCTCAAGCTAGGTTTCAATGCACATGGAGCAGA
GGAATACTGCAGTACGAGTGTCGGTATTGAGTTCCTTTTGAGCCTAACAGAAATCAATGGAGTAATTGGCGTCTTTGGTG
CTAGTAAATCTGACAGAATAGCTGCAGAGCGCGTGTTGATCAATGTTTCAAAAGTACATCCAGGTTGTCCTAGCATCAAT
ATCCATCAGGTAGATTGCATTTTTGACGGTAATGAAGCAATGAGTAGCAAGGCTGAAGAAAAGGCATACATGTCTCTACA
GGAAACACAATGTCAGATCTTGGAGAAAGTTTTAACTGATCAACATGGCATTCTGGAACTTAACACACAGAAAAATAAGG
AAGGAAGAGTTGTCAGAGGCTTCTCCCTTGTGCATTCTGGCAGGAACTTCTTTTTCACGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28598.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis