Browse Element(s) Details


OsAffx.28637.1.S1_x_at

Description tigr:9635.m02713
TID=OsAffx.28637.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=O-methyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2797011/11O-methyltransferase family protein, expressed
LOC_Os07g2804011/11O-methyltransferase family protein, expressed
LOC_Os07g278808/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g27930Os.5304.1.S1_at9/117+16288275..16291748DNA-directed RNA polymerases I, II, and III 14.4 kDa polypeptide, putative, expressed
LOC_Os07g27940NANA7+16293116..16293668Protease inhibitor/seed storage/LTP family protein
LOC_Os07g27950Os.11054.1.S1_at10/117+16301327..16305865Zinc finger, C3HC4 type family protein, expressed
LOC_Os07g27960OsAffx.28635.1.S1_at11/117+16307259..16307887expressed protein
LOC_Os07g27970OsAffx.28637.1.S1_x_at11/117+16313393..16317142O-methyltransferase family protein, expressed
LOC_Os07g27980OsAffx.16446.1.S1_at11/117+16323164..16325862hypothetical protein
LOC_Os07g27980OsAffx.24637.2.S1_x_at1/117+16323164..16325862hypothetical protein
LOC_Os07g28000OsAffx.20497.1.S1_at2/117+16331281..16334644transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28010NANA7+16335345..16335687hypothetical protein
LOC_Os07g28020OsAffx.19421.2.S1_at2/117+16337370..16339695transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28030OsAffx.18924.4.S1_at6/117+16341916..16344165transposon protein, putative, unclassified
LOC_Os07g28030OsAffx.18924.2.S1_x_at5/117+16341916..16344165transposon protein, putative, unclassified
LOC_Os07g28030OsAffx.22896.1.S1_x_at1/117+16341916..16344165transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28637.1.S1_x_at--244--4173Chr07:16271903..16271927 (25 bp)
CGCCAGGTGTTCGACAAGATCACCT
LOC_Os07g27880
OsAffx.28637.1.S1_x_at--523--4413Chr07:16271904..16271928 (25 bp)
GCCAGGTGTTCGACAAGATCACCTC
LOC_Os07g27880
OsAffx.28637.1.S1_x_at--231--9133Chr07:16272006..16272030 (25 bp)
TGCTGGACCTTCCTCACGTGATCGA
LOC_Os07g27880
OsAffx.28637.1.S1_x_at--946--4713Chr07:16272007..16272031 (25 bp)
GCTGGACCTTCCTCACGTGATCGAT
LOC_Os07g27880
OsAffx.28637.1.S1_x_at--855--3893Chr07:16272008..16272032 (25 bp)
CTGGACCTTCCTCACGTGATCGATT
LOC_Os07g27880
OsAffx.28637.1.S1_x_at--853--8533Chr07:16272009..16272033 (25 bp)
TGGACCTTCCTCACGTGATCGATTC
LOC_Os07g27880
OsAffx.28637.1.S1_x_at--943--8093Chr07:16272010..16272034 (25 bp)
GGACCTTCCTCACGTGATCGATTCC
LOC_Os07g27880
OsAffx.28637.1.S1_x_at--8--1753Chr07:16272012..16272036 (25 bp)
ACCTTCCTCACGTGATCGATTCCAT
LOC_Os07g27880
OsAffx.28637.1.S1_x_at--233--3632Chr07:16347122..16347146 (25 bp)
CTTCCTCACGTGATCGATTCCATTC
LOC_Os07g28040
OsAffx.28637.1.S1_x_at--45--10672Chr07:16347121..16347145 (25 bp)
TTCCTCACGTGATCGATTCCATTCC
LOC_Os07g28040
OsAffx.28637.1.S1_x_at--275--2592Chr07:16345575..16345599 (25 bp)
AACGATGCAAGGAGGCAATTCCTTC
LOC_Os07g28040
Target Sequence 
CGCCAGGTGTTCGACAAGATCACCTCNCTTGTGGANGTCGCAGGNGGCACNGGCNCGGCGGCGAGGGNGGTGGCNGCNGC
GTTCCCGCATATCAAGTGCACNGTGCTGGACCTTCCTCACGTGATCGATTCCATTCCNGNNGANCATNNNGGCNNNGANG
TTGTTNAGTTTGTNGCAGGNGATATGATGGATTTNATCCCCCNAGCNGATGCNCTCCTGCTNAAGTTTGTCCTACACGAN
TGGAGTGATGAGGACTGCNTNAAGATANTAAAACGATGCAAGGAGGCAATTCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28637.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis