Browse Element(s) Details


OsAffx.28692.1.S1_at

Description tigr:9635.m03058
TID=OsAffx.28692.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3123010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g31190OsAffx.28689.1.S1_at11/117+18451961..18460762expressed protein
LOC_Os07g31200OsAffx.28690.1.S1_at9/117+18473342..18474200hypothetical protein
LOC_Os07g31210Os.44009.1.S1_at11/117+18477349..18479358Protein kinase domain containing protein
LOC_Os07g31220NANA7+18480206..18480860hypothetical protein
LOC_Os07g31230OsAffx.28692.1.S1_at10/117+18485023..18487346hypothetical protein
LOC_Os07g31230OsAffx.23391.1.S1_at2/117+18485023..18487346hypothetical protein
LOC_Os07g31240NANA7+18489093..18493475retrotransposon protein, putative, unclassified
LOC_Os07g31250Os.35935.2.S1_at11/117+18496568..18501005Protein kinase domain containing protein, expressed
LOC_Os07g31260Os.10451.2.S1_at11/117+18501793..18505457expressed protein
LOC_Os07g31270Os.49873.1.S1_at11/117+18508310..18513451expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28692.1.S1_at--868--2451Chr07:18487292..18487316 (25 bp)
AACAATGCCACTCCTGGAGGAGGGA
LOC_Os07g31230
OsAffx.28692.1.S1_at--221--3931Chr07:18487263..18487287 (25 bp)
CGGCGCTGCAGGAGACAACAACAAT
LOC_Os07g31230
OsAffx.28692.1.S1_at--273--3091Chr07:18487232..18487256 (25 bp)
AATACAAATGCCTTAATCTCCACTG
LOC_Os07g31230
OsAffx.28692.1.S1_at--830--6512Chr07:18485592..18485638 (25 bp)
GATATTGCGTCATGCTGAACCTGAA
NONE
OsAffx.28692.1.S1_at--1075--1751Chr07:18486475..18486499 (25 bp)
ACCTGAAGTTGTGGCTGGGTCTGCT
LOC_Os07g31230
OsAffx.28692.1.S1_at--532--5551NONE
GAAAGCCAGAAACGGTTCAGCATGC
NONE
OsAffx.28692.1.S1_at--525--7891Chr07:18485561..18485585 (25 bp)
GGTTCAGCATGCCTCATTCTTCATA
LOC_Os07g31230
OsAffx.28692.1.S1_at--949--4271Chr07:18485517..18485541 (25 bp)
CCTGCACAATTTTCGCCTAGGAGCA
LOC_Os07g31230
OsAffx.28692.1.S1_at--244--10311Chr07:18485510..18485531 (22 bp)
TTTCGCCTAGGAGCAAACATGTTGT
LOC_Os07g31230
OsAffx.28692.1.S1_at--614--611Chr07:18485087..18485111 (25 bp)
ATGCGGACACTGTAGGAATGGCCTT
LOC_Os07g31230
OsAffx.28692.1.S1_at--47--5291Chr07:18485072..18485096 (25 bp)
GAATGGCCTTCCTCGCGGACGTTGG
LOC_Os07g31230
Target Sequence 
AACAATGCCACTCCTGGAGGAGGGAACGGCGGCGCTGCAGGAGACAACAACAATGAAGGCAATACAAATGCCTTAATCTC
CACTGCACCGTTTTTTGGGTATATGATGATGCCGATGGAAGAGATATTGCGTCATGCTGAACCTGAAGTTGTGGCTGGGT
CTGCTCGTGGTTTGGATAATTTCAATGTATTACAAAAGGCAGCAAAGAAACTTTTGCATGATGAGGCAAAGGGTTGTGGC
AATGATTTCACATTATTGCATACAATGCTTGAACCTAAGATTGAAAGCCAGAAACGGTTCAGCATGCCTCATTCTTCATA
TCCTCCTCCTCCTGATCCTCCTGCACAATTTTCGCCTAGGAGCAAACATGTTGTAGGAAGGGTTGGCGCTGTCGGCAGGG
ATGCGGACACTGTAGGAATGGCCTTCCTCGCGGACGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis