Browse Element(s) Details


OsAffx.28767.1.S1_at

Description tigr:9635.m03538
TID=OsAffx.28767.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3580010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35750Os.27185.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.5539.1.S1_x_at11/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750Os.46481.2.S1_x_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35750OsAffx.28164.2.S1_at1/117+21410931..21417602Protein kinase domain containing protein, expressed
LOC_Os07g35760OsAffx.16573.1.S1_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35760OsAffx.16573.1.S1_x_at11/117+21419943..21420509hypothetical protein
LOC_Os07g35770OsAffx.5555.1.S1_at11/117+21424656..21425801serine/threonine kinase, putative
LOC_Os07g35780OsAffx.16574.1.S1_at11/117+21426984..21429759protein kinase family protein, putative
LOC_Os07g35790Os.26903.1.S1_at11/117+21432863..21435957Protein kinase domain containing protein, expressed
LOC_Os07g35800OsAffx.28767.1.S1_at10/117+21436453..21438502hypothetical protein
LOC_Os07g35810Os.12664.1.S1_at8/117+21439491..21443096Protein kinase domain containing protein, expressed
LOC_Os07g35820NANA7+21446393..21446749hypothetical protein
LOC_Os07g35830NANA7+21450497..21451046NA
LOC_Os07g35840OsAffx.4053.1.S1_at1/117+21455609..21458589transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28767.1.S1_at--961--10651Chr07:21436483..21436507 (25 bp)
TTGCCATGCGATGGCCGATTGGCCG
LOC_Os07g35800
OsAffx.28767.1.S1_at--862--4231NONE
CCGAGGCCGACAGGGCATCCGTGAA
NONE
OsAffx.28767.1.S1_at--713--3451Chr07:21438239..21438262 (24 bp)
CAGGGCATCCGTGAAGGACGAGCTC
LOC_Os07g35800
OsAffx.28767.1.S1_at--354--2851Chr07:21438266..21438290 (25 bp)
AAGTCTGCAGCCGTCATGGAGAAGC
LOC_Os07g35800
OsAffx.28767.1.S1_at--1157--3751Chr07:21438292..21438316 (25 bp)
CTCTCAGGTGCTGGAACCCGATGAG
LOC_Os07g35800
OsAffx.28767.1.S1_at--1090--8151Chr07:21438304..21438328 (25 bp)
GGAACCCGATGAGACCGACGACCAT
LOC_Os07g35800
OsAffx.28767.1.S1_at--215--1331Chr07:21438360..21438384 (25 bp)
AGAGGACGGCCAACATGAGCCGCCG
LOC_Os07g35800
OsAffx.28767.1.S1_at--660--691Chr07:21438374..21438398 (25 bp)
ATGAGCCGCCGCGAGAGTGCCACGT
LOC_Os07g35800
OsAffx.28767.1.S1_at--458--1471Chr07:21438417..21438441 (25 bp)
AGAAGGCCATGATCGCTGCAAAGCG
LOC_Os07g35800
OsAffx.28767.1.S1_at--683--711Chr07:21438425..21438449 (25 bp)
ATGATCGCTGCAAAGCGCAAGCTCC
LOC_Os07g35800
OsAffx.28767.1.S1_at--490--5171Chr07:21438441..21438465 (25 bp)
GCAAGCTCCGCGAAGTGTATCAAGA
LOC_Os07g35800
Target Sequence 
TTGCCATGCGATGGCCGATTGGCCGAGGCCGACAGGGCATCCGTGAAGGACGAGCTCCTCAAGTCTGCAGCCGTCATGGA
GAAGCTCTCTCAGGTGCTGGAACCCGATGAGACCGACGACCATCACGCCAAAATCCTGCAGCCATCGCCGCCCAAGAGGA
CGGCCAACATGAGCCGCCGCGAGAGTGCCACGTCGTCGTGCAGTACCGACGAGAAGGCCATGATCGCTGCAAAGCGCAAG
CTCCGCGAAGTGTATCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis