Browse Element(s) Details


OsAffx.28785.1.S1_at

Description tigr:9635.m03645
TID=OsAffx.28785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3683010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36790OsAffx.28784.1.S1_at11/117+22041765..22042016hypothetical protein
LOC_Os07g36800Os.17560.1.A1_at11/117+22044300..22046622Uncharacterised protein family containing protein, expressed
LOC_Os07g36810OsAffx.5551.1.S1_at11/117+22049643..22050308hypothetical protein
LOC_Os07g36820Os.38285.1.A1_at11/117+22054761..22058009Protein of unknown function, DUF614 containing protein, expressed
LOC_Os07g36830OsAffx.28785.1.S1_at10/117+22064721..22069602F-box domain containing protein
LOC_Os07g36840OsAffx.5552.1.S1_at11/117+22072044..22073273F-box domain containing protein
LOC_Os07g36850NANA7+22074147..22075069transposon protein, putative, Pong sub-class
LOC_Os07g36860OsAffx.16590.1.S1_at11/117+22075496..22077485hypothetical protein
LOC_Os07g36870OsAffx.5553.1.S1_at11/117+22080910..22082154F-box domain containing protein, expressed
LOC_Os07g36880Os.53498.1.S1_at11/117+22086306..22088716F-box domain containing protein, expressed
LOC_Os07g36890OsAffx.28786.1.S1_at11/117+22089230..22091643F-box domain containing protein
LOC_Os07g36900OsAffx.5554.1.S1_at11/117+22093436..22097583F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28785.1.S1_at--802--1731NONE
ACCTTGCAGCTTGAGCCGGATTTGA
NONE
OsAffx.28785.1.S1_at--516--5871Chr07:22068552..22068571 (20 bp)
GAGCCGGATTTGACCTATCCTGGAA
LOC_Os07g36830
OsAffx.28785.1.S1_at--823--5831Chr07:22068558..22068582 (25 bp)
GACCTATCCTGGAACAACAATTCTG
LOC_Os07g36830
OsAffx.28785.1.S1_at--1041--2371Chr07:22068573..22068597 (25 bp)
AACAATTCTGGACAAGCCCTTCCGA
LOC_Os07g36830
OsAffx.28785.1.S1_at--424--2651Chr07:22068586..22068610 (25 bp)
AAGCCCTTCCGAGCTAGGTTATATC
LOC_Os07g36830
OsAffx.28785.1.S1_at--933--1011Chr07:22068601..22068664 (25 bp)
AGGTTATATCCTACTCTAGATGGAG
LOC_Os07g36830
OsAffx.28785.1.S1_at--1131--8031Chr07:22068661..22068685 (25 bp)
GGAGTATCTGTTATGGTTATTGTTA
LOC_Os07g36830
OsAffx.28785.1.S1_at--1084--5531Chr07:22068694..22068718 (25 bp)
GAAACTTTGTATGACTTGGATATTT
LOC_Os07g36830
OsAffx.28785.1.S1_at--375--8691Chr07:22068720..22069205 (25 bp)
TGTGCAAGAGATTTTCTTATACGAC
LOC_Os07g36830
OsAffx.28785.1.S1_at--1048--2273Chr08:10353763..10353896 (25 bp)
AAATCCAACTCAAACACAGATATGT
NONE
OsAffx.28785.1.S1_at--1110--9531Chr07:22069281..22069305 (25 bp)
TCTTAAAAACGTGGGCTTCGGAGCG
LOC_Os07g36830
Target Sequence 
ACCTTGCAGCTTGAGCCGGATTTGACCTATCCTGGAACAACAATTCTGGACAAGCCCTTCCGAGCTAGGTTATATCCTAC
TCTAGATGGAGTATCTGTTATGGTTATTGTTATGGTTATTGAAACTTTGTATGACTTGGATATTTATGTGCACAAGATAT
TAAGCAAACAATTGTGCAAGAGATTTTCTTATACGACTTCTTTTGTAGTTCCAAAAGCAAACGAGCTTAAAATCCAACTC
AAACACAGATATGTATTTCCAAAAGCGAACAATCTTAAAAACGTGGGCTTCGGAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28785.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis