Browse Element(s) Details


OsAffx.28806.1.S1_at

Description tigr:9635.m03776
TID=OsAffx.28806.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cytochrome p450 51 (ec 1.14.13.70) (cypl1) (p450-l1a1) (obtusifoliol 14-alpha demethylase) (fragment). (wheat
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3798011/11Cytochrome P450 51, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37940NANA7+22764427..22766233hypothetical protein
LOC_Os07g37950Os.30337.1.S1_at11/117+22772455..22773493disease resistance protein, putative, expressed
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative
LOC_Os07g37980OsAffx.28806.1.S1_at11/117+22787237..22789492Cytochrome P450 51, putative
LOC_Os07g37990Os.10954.1.S1_at11/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g37990Os.18186.1.S1_at1/117+22790068..22796708Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os07g38000Os.37602.2.S1_x_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38000Os.37602.1.S1_at11/117+22797160..22798498Cytochrome c family protein, expressed
LOC_Os07g38010NANA7+22800855..22801187hypothetical protein
LOC_Os07g38020OsAffx.16606.1.A1_at3/117+22803962..22804693hypothetical protein
LOC_Os07g38030Os.37032.1.S1_a_at11/117+22806023..22807670GRAS family transcription factor containing protein, expressed
LOC_Os07g38040OsAffx.28808.1.S1_at11/117+22810054..22810287expressed protein
LOC_Os07g38050OsAffx.22479.1.S1_x_at11/117+22814061..22815137hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0008398molecular_functionsterol 14-demethylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28806.1.S1_at--175--5011Chr07:22788405..22788429 (25 bp)
GCAGGCCTATGACAGTTATGATTTG
LOC_Os07g37980
OsAffx.28806.1.S1_at--181--5651Chr07:22788415..22788439 (25 bp)
GACAGTTATGATTTGAGCCCTAGAC
LOC_Os07g37980
OsAffx.28806.1.S1_at--799--5871Chr07:22788429..22788453 (25 bp)
GAGCCCTAGACTTGTCTCCAAAAGT
LOC_Os07g37980
OsAffx.28806.1.S1_at--248--1891Chr07:22789152..22789176 (25 bp)
ACGATGCCCTGCAGCGGATGGGCCA
LOC_Os07g37980
OsAffx.28806.1.S1_at--613--4231Chr07:22789284..22789308 (25 bp)
CCGAGTACGAGGTCCCAGCAGGGCA
LOC_Os07g37980
OsAffx.28806.1.S1_at--69--9931Chr07:22789289..22789313 (25 bp)
TACGAGGTCCCAGCAGGGCACACGG
LOC_Os07g37980
OsAffx.28806.1.S1_at--840--4231Chr07:22789322..22789346 (25 bp)
CCGATGGTGATCCACAACGCGCTGC
LOC_Os07g37980
OsAffx.28806.1.S1_at--370--2611Chr07:22789337..22789361 (25 bp)
AACGCGCTGCCACACGTGTATGAGG
LOC_Os07g37980
OsAffx.28806.1.S1_at--684--3811Chr07:22789343..22789367 (25 bp)
CTGCCACACGTGTATGAGGACGCCG
LOC_Os07g37980
OsAffx.28806.1.S1_at--698--4551Chr07:22789388..22789412 (25 bp)
TTCGGCCCCGCGAGGGAAGAGTACA
LOC_Os07g37980
OsAffx.28806.1.S1_at--555--3351Chr07:22789430..22789454 (25 bp)
CACGCGTACACGGTATTTGGCGGCG
LOC_Os07g37980
Target Sequence 
GCAGGCCTATGACAGTTATGATTTGAGCCCTAGACTTGTCTCCAAAAGTACAAGGACGGCCGCGCCACGACGGAGGGCAG
GCGGAGGTCGCCGGGATGCTCGTATCGGCGCTCTTCGCGGGGCAGTACACGAGCTCCAGCACCAGCACGTGGACCGGCGC
GCGCGCCTCCTCACCCACCCCGAGCACCTCCGCGCCGCCGTGCGGGAGCAGGAGGAGCTCGTACTCGTGCGGCACCGGCA
CGGCGGCGACGTCGTCGACCACGATGCCCTGCAGCGGATGGGCCACCTCCACCGCTGCGTCAAGGAGACCCTGCGTCTCC
ACCCGCCGTCGCTGATGCTGCTCCGCCACGCGCGCCGGAGCTTCGTCGTGAGGGCCAGGGGGAGCGGCGATGCCGAGTAC
GAGGTCCCAGCAGGGCACACGGTGGCGAGCCCGATGGTGATCCACAACGCGCTGCCACACGTGTATGAGGACGCCGGGTC
GTTCGACCCGGGCAGGTTCGGCCCCGCGAGGGAAGAGTACAGGGCGTACGCCGCCGACCACGCGTACACGGTATTTGGCG
GCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28806.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis