Browse Element(s) Details


OsAffx.28894.1.S1_at

Description tigr:9635.m04415
TID=OsAffx.28894.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4400011/11hypothetical protein
LOC_Os01g388602/11hypothetical protein
LOC_Os03g280301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43970Os.34315.1.S1_at11/117+26286279..26289370calmodulin-binding family protein, putative, expressed
LOC_Os07g43980Os.41098.1.S1_at11/117+26290499..26294460DEAD/DEAH box helicase family protein, expressed
LOC_Os07g43990Os.8175.1.S1_at11/117+26296631..26298846expressed protein
LOC_Os07g44000OsAffx.28894.1.S1_at11/117+26299652..26300601hypothetical protein
LOC_Os07g44010OsAffx.5630.1.S1_x_at11/117+26306253..26306835expressed protein
LOC_Os07g44020Os.41096.1.S1_at11/117+26307425..26309991DedA family protein, expressed
LOC_Os07g44030OsAffx.28966.1.S1_at11/117+26311499..26313157myb family transcription factor, putative
LOC_Os07g44040Os.20297.1.S1_at11/117+26319587..26322425Ras-related protein ARA-4, putative, expressed
LOC_Os07g44050Os.20864.1.A1_at11/117+26323397..26324948expressed protein
LOC_Os07g44050Os.20864.2.S1_at1/117+26323397..26324948expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28894.1.S1_at--228--951Chr07:26299684..26299708 (25 bp)
AGGACCACGTGGGACGATAACCAGG
LOC_Os07g44000
OsAffx.28894.1.S1_at--1151--8071Chr07:26299685..26299709 (25 bp)
GGACCACGTGGGACGATAACCAGGT
LOC_Os07g44000
OsAffx.28894.1.S1_at--1057--1691Chr07:26299687..26299709 (23 bp)
ACCACGTGGGACGATAACCAGGTGG
LOC_Os07g44000
OsAffx.28894.1.S1_at--711--1911Chr07:26299690..26300145 (25 bp)
ACGTGGGACGATAACCAGGTGGGCA
LOC_Os07g44000
OsAffx.28894.1.S1_at--729--8111Chr07:26299695..26300150 (25 bp)
GGACGATAACCAGGTGGGCAGCGAG
LOC_Os07g44000
OsAffx.28894.1.S1_at--727--1371Chr07:26300149..26300173 (25 bp)
AGAGCTGGTGGCGACCCACACGCTG
LOC_Os07g44000
OsAffx.28894.1.S1_at--408--8111Chr07:26300522..26300546 (25 bp)
GGACTTACAGGGTTTTGCAATTTAT
LOC_Os07g44000
OsAffx.28894.1.S1_at--774--5691Chr07:26300523..26300547 (25 bp)
GACTTACAGGGTTTTGCAATTTATT
LOC_Os07g44000
OsAffx.28894.1.S1_at--98--3673Chr07:26300525..26300549 (25 bp)
CTTACAGGGTTTTGCAATTTATTGG
LOC_Os07g44000
OsAffx.28894.1.S1_at--120--8873Chr07:26300527..26300551 (25 bp)
TACAGGGTTTTGCAATTTATTGGGT
LOC_Os07g44000
OsAffx.28894.1.S1_at--179--4293Chr07:26300538..26300562 (25 bp)
GCAATTTATTGGGTTTATTGGGCCT
LOC_Os07g44000
Target Sequence 
AGGACCACGTGGGACGATAACCAGGTGGGCAGCGAGAGCTGGTGGCGACCCACACGCTGCCGCTCGCCAGGCGCGCCGCG
GACGGCGGCGCTCGTCGCGGTCGCGGTGGAGGCTGGAGGCGGCGCCGACGCGGACGGCGGCGGTCCTCACTGCCGCGGCG
GAGGCTGGAGGCGGATGGCGGCGCTCGTGGGGGACGCTGCGGAGGCGGGAGGTGGCGCCGAGGCGGACGGCAGCGCTCGT
CGGGGCCGCGGCGGTGGCTGGAGGCGGCGCCGAGGCGGCGCTCGTCGGGACTTGGGACCGCGGCGGAGGTGGGAGGCGGC
GCCGAGGTGGAAGGCGACTCGATGGATGGGGTGGGGACTGGGGATGGATGGAGGCGGCGGTGCTGAGGTGGTGGGACTGT
GGAATGGGGACTTACAGGGTTTTGCAATTTATTGGGTTTATTGGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28894.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis