Browse Element(s) Details


OsAffx.28914.1.S1_at

Description tigr:9635.m04552
TID=OsAffx.28914.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4532010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45300OsAffx.10304.1.S1_s_at11/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45300OsAffx.10304.2.S1_at10/117+27027894..27033398Tim44-like domain containing protein, expressed
LOC_Os07g45310Os.17884.1.S1_at11/117+27035300..27036972BSD domain containing protein, expressed
LOC_Os07g45320Os.7852.2.S1_s_at11/117+27038510..27039940expressed protein
LOC_Os07g45320OsAffx.28914.1.S1_at10/117+27038510..27039940expressed protein
LOC_Os07g45320Os.7852.2.S1_at5/117+27038510..27039940expressed protein
LOC_Os07g45330Os.31460.1.S1_at11/117+27042532..27044452expressed protein
LOC_Os07g45330Os.55007.1.S1_x_at7/117+27042532..27044452expressed protein
LOC_Os07g45340OsAffx.28915.1.S1_at11/117+27047094..27048398hypothetical protein
LOC_Os07g45350Os.5183.2.S1_at11/117+27049024..27053091expressed protein
LOC_Os07g45350Os.5183.1.S1_x_at11/117+27049024..27053091expressed protein
LOC_Os07g45360Os.11258.1.S1_at11/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45360Os.11258.1.S2_at10/117+27053648..27057948Type III restriction enzyme, res subunit family protein, expressed
LOC_Os07g45370Os.28679.1.S1_at10/117+27056913..27060589expressed protein
LOC_Os07g45390Os.32101.2.S1_at11/117+27062213..27065707hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28914.1.S1_at--1127--10631Chr07:27038554..27038578 (25 bp)
TTCGCGGGATTCGTGGCTCGGTGGA
LOC_Os07g45320
OsAffx.28914.1.S1_at--175--1011Chr07:27038583..27038607 (25 bp)
AGGATTCATGCCGTGTTGCGACGTT
LOC_Os07g45320
OsAffx.28914.1.S1_at--1006--6551Chr07:27038585..27038609 (25 bp)
GATTCATGCCGTGTTGCGACGTTGG
LOC_Os07g45320
OsAffx.28914.1.S1_at--1035--10511Chr07:27038587..27038611 (25 bp)
TTCATGCCGTGTTGCGACGTTGGGC
LOC_Os07g45320
OsAffx.28914.1.S1_at--547--4031Chr07:27038604..27038628 (25 bp)
CGTTGGGCGAGGGATTCGTCCTTAT
LOC_Os07g45320
OsAffx.28914.1.S1_at--1043--4591Chr07:27038610..27038634 (25 bp)
GCGAGGGATTCGTCCTTATGGCTAG
LOC_Os07g45320
OsAffx.28914.1.S1_at--1139--1051Chr07:27038613..27038637 (25 bp)
AGGGATTCGTCCTTATGGCTAGGAT
LOC_Os07g45320
OsAffx.28914.1.S1_at--685--6571Chr07:27038616..27038640 (25 bp)
GATTCGTCCTTATGGCTAGGATCCA
LOC_Os07g45320
OsAffx.28914.1.S1_at--622--9391Chr07:27038619..27038643 (25 bp)
TCGTCCTTATGGCTAGGATCCAGCT
LOC_Os07g45320
OsAffx.28914.1.S1_at--680--4311Chr07:27038623..27038647 (25 bp)
CCTTATGGCTAGGATCCAGCTGATG
LOC_Os07g45320
OsAffx.28914.1.S1_at--755--7431NONE
GTGTCTTGACGATGACAGAGGCACC
NONE
Target Sequence 
TTCGCGGGATTCGTGGCTCGGTGGATGGGAGGATTCATGCCGTGTTGCGACGTTGGGCGAGGGATTCGTCCTTATGGCTA
GGATCCAGCTGATGCGGGATGCGCCCAAGTTTCGTGTCTTGACGATGACAGAGGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28914.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis