Browse Element(s) Details


OsAffx.28918.4.S1_at

Description gb:NM_185939.1
DB_XREF= gi:34898963
GEN=P0427D10.19
TID=OsAffx.28918.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative BLE2 protein (P0427D10.19), mRNA.
PROD=putative BLE2 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g260201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25960Os.32823.2.S1_s_at1/117+14898193..14899748expressed protein
LOC_Os07g25970NANA7+14900416..14903096hypothetical protein
LOC_Os07g25980NANA7+14905316..14905935retrotransposon protein, putative, unclassified
LOC_Os07g25990NANA7+14908297..14909779retrotransposon protein, putative, unclassified
LOC_Os07g26000Os.27775.1.A1_at11/117+14914349..14918754F-box domain containing protein, expressed
LOC_Os07g26010OsAffx.5444.1.S1_x_at10/117+14920757..14921624hypothetical protein
LOC_Os07g26020OsAffx.5445.1.S1_at10/117+14923630..14930932hypothetical protein
LOC_Os07g26020OsAffx.20631.1.S1_x_at7/117+14923630..14930932hypothetical protein
LOC_Os07g26020Os.49936.2.A1_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26020OsAffx.28918.4.S1_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26020Os.33601.3.S1_x_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26030OsAffx.30350.1.S1_at2/117+14931314..14934464retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26040NANA7+14934845..14937265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26050OsAffx.16416.1.S1_x_at11/117+14941372..14941709hypothetical protein
LOC_Os07g26050OsAffx.16416.1.S1_at11/117+14941372..14941709hypothetical protein
LOC_Os07g26060NANA7+14945128..14945693hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28918.4.S1_at--1086--1731Chr07:27123863..27123887 (25 bp)
ACCTCGAGACCCAACGAAACAGACT
NONE
OsAffx.28918.4.S1_at--423--25914Chr12:25683853..25683877 (25 bp)
AACGAAACAGACTCGGGCTCGGACT
NONE
OsAffx.28918.4.S1_at--1011--2171Chr07:27123918..27124032 (25 bp)
ACACACCGCCGATGCTAAATTTGAG
NONE
OsAffx.28918.4.S1_at--601--4211Chr07:27123923..27124037 (25 bp)
CCGCCGATGCTAAATTTGAGTGTAA
NONE
OsAffx.28918.4.S1_at--638--6111Chr07:27124030..27124054 (25 bp)
GAGTGTAAACAGAAGGTGCAGCAAA
NONE
OsAffx.28918.4.S1_at--755--7771Chr07:27124044..27124068 (25 bp)
GGTGCAGCAAATTGCATTCCCTGGT
NONE
OsAffx.28918.4.S1_at--268--9071Chr07:27124056..27124080 (25 bp)
TGCATTCCCTGGTGATAGCAAATTT
NONE
OsAffx.28918.4.S1_at--421--291NONE
ATAGCAAATTTGGACCACACCGCCG
NONE
OsAffx.28918.4.S1_at--618--2114Chr07:27125507..27125531 (25 bp)
ACATGAGGCTCATCGGCAGTGTCGC
NONE
OsAffx.28918.4.S1_at--860--914Chr07:27125512..27125532 (21 bp)
AGGCTCATCGGCAGTGTCGCGAGAC
NONE
OsAffx.28918.4.S1_at--760--8291NONE
GGCTTGAGCTCAATGATAAATAACT
NONE
Target Sequence 
ACCTCGAGACCCAACGAAACAGACTCGGGCTCGGACTCTGCCGGTCAGACCGGCCACACACCGCCGATGCTAAATTTGAG
TGTAAACAGAAGGTGCAGCAAATTGCATTCCCTGGTGATAGCAAATTTGGACCACACCGCCGCATCCGCCTCCGCCTCCG
ACCACTCTTCTTGCACCCAGCCAAATCGCCGCACCTCCCCCTTGCCACCGCGAGGCCAGTTCCGGCGGAGGGTAGACCGT
GCTCGCCGGATTCGGGTAGCCACGACCTCCTTGCCGGCGGATCCGGTCACCCGGAGGCAAGGGCAGGGCTAGCACATGAG
GCTCATCGGCAGTGTCGCGAGACGGCGATAGATCCAGAGCCACTGGATCTGTTGATCTTGGCGGCGGCGATGTGGCACCA
ATCTCAGACATTTCGTGTCATCGGTGTTGCTGGCTTGAGCTCAATGATAAATAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28918.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis