Browse Element(s) Details


OsAffx.28924.1.S1_at

Description tigr:9635.m04601
TID=OsAffx.28924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4578011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45740OsAffx.14221.1.S1_x_at5/117+27306234..27307832hypothetical protein
LOC_Os07g45750OsAffx.30966.3.A1_x_at11/117+27308024..27314863AT hook motif-containing protein, putative, expressed
LOC_Os07g45760OsAffx.30966.4.S1_at1/117+27316342..27319173hypothetical protein
LOC_Os07g45760OsAffx.30966.4.S1_x_at1/117+27316342..27319173hypothetical protein
LOC_Os07g45770Os.2987.3.S1_x_at1/117+27323005..27324904retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g45780OsAffx.28924.1.S1_at11/117+27328621..27331805expressed protein
LOC_Os07g45790OsAffx.16726.1.S1_at10/117+27332547..27334517expressed protein
LOC_Os07g45800NANA7+27335904..27336224hypothetical protein
LOC_Os07g45810NANA7+27340664..27342422hypothetical protein
LOC_Os07g45820NANA7+27343089..27344438retrotransposon protein, putative, unclassified
LOC_Os07g45830NANA7+27347671..27354767retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g45840NANA7+27356694..27357119retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28924.1.S1_at--583--8891Chr07:27329806..27329830 (25 bp)
TGAGATCCCTCGTTTGCCGTGCTGG
LOC_Os07g45780
OsAffx.28924.1.S1_at--981--9171Chr07:27329820..27329844 (25 bp)
TGCCGTGCTGGATTTACAGGTCAGT
LOC_Os07g45780
OsAffx.28924.1.S1_at--618--8971Chr07:27329852..27329876 (25 bp)
TGAATCTATCAATCTGTACTACGAA
LOC_Os07g45780
OsAffx.28924.1.S1_at--702--7011Chr07:27329867..27329891 (25 bp)
GTACTACGAATATGCCTTCGACAAA
LOC_Os07g45780
OsAffx.28924.1.S1_at--465--10191Chr07:27330133..27330157 (25 bp)
TATATGCTGCGAAGGTCATGGCCGA
LOC_Os07g45780
OsAffx.28924.1.S1_at--670--2891Chr07:27330144..27330168 (25 bp)
AAGGTCATGGCCGAGTTCGCAAAGA
LOC_Os07g45780
OsAffx.28924.1.S1_at--1011--10631Chr07:27330159..27330183 (25 bp)
TTCGCAAAGAGCCTCCGAATTGTAA
LOC_Os07g45780
OsAffx.28924.1.S1_at--762--9291Chr07:27330172..27330196 (25 bp)
TCCGAATTGTAACTGTCCCTGAGGC
LOC_Os07g45780
OsAffx.28924.1.S1_at--1068--8691Chr07:27330185..27330209 (25 bp)
TGTCCCTGAGGCAATGCAGCTTGTA
LOC_Os07g45780
OsAffx.28924.1.S1_at--546--2571Chr07:27330212..27330236 (25 bp)
AACGCTTCTGGATACCGAGGGAAGA
LOC_Os07g45780
OsAffx.28924.1.S1_at--411--6191Chr07:27330244..27330268 (25 bp)
GAGGACACCCACTTCTAAATGCAGA
LOC_Os07g45780
Target Sequence 
TGAGATCCCTCGTTTGCCGTGCTGGATTTACAGGTCAGTGGGGAGTTGAATCTATCAATCTGTACTACGAATATGCCTTC
GACAAATACATGGAAGGAGGTGTGTTTGCTCCAAAGAGGATCAACCTCAGCAACTTTGCGATAGATTCTATAAACTCTGA
CTTGTCCAAGAATCAACTGTACGGGATCCAGATGATGCACACTTTTCTGCAAAGAGATCCGACAAGAGCACAACTCCTGG
AGAAACTCACCACTTCAATGCAGACGAAGGCCAGGTTGATCAACATGTTGGACTGGACTAATGGAAACCAACATACAACT
ATTAGATTATATGCTGCGAAGGTCATGGCCGAGTTCGCAAAGAGCCTCCGAATTGTAACTGTCCCTGAGGCAATGCAGCT
TGTATCAACGCTTCTGGATACCGAGGGAAGACCAAAAAGAGGACACCCACTTCTAAATGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis